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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGSQLKNLKAALKARGYDREEKKKAIAEIREEFNPFEIKAARNKRIAVGKPGISKQIGEEQRKRAFEARKMMKNKRGGVI
DKRPQRKKTKAEVMKEVIAKSKFYKQERQKAQGIMEDQIDNLDDNFEDVMSELMMTDLDKEYDIKVKELQLDKRAAPSDR
TKTEEEKNAEAEEKKRELEQQRLDRMNGRTHDALLDQVKKLDLDDHPKIVKNIIKAYQPKLAEGNKEKLGKFTAVLLRHI
IFLSNQNYLKNVQSFKRTQNALISILKSLSEKYNRELSEECRDYINEMQARYKKNHFDALSNGDLVFFSIIGILFSTSDQ
YHLVITPALILMSQFLEQIKFNSLKRIAFGAVLVRIVSQYQRISKRYIPEVVYFFQKILLTFIVEPLDFENIRLDSYELG
LPLDVDFTKKRSTIIPLHTLSTMDTEAHPVDQCVSVLLNVMESLDATISTVWKSLPAFNEIILPIQQLLSAYTSKYSDFE
KPRNILNKVEKLTKFTEHIPLALQNHKPVSIPTHAPKYEENFNPDKKSYDPDRTRSEINKMKAQLKKERKFTMKEIRKDA
KFEARQRIEEKNKESSDYHAKMAHIVNTINTEEGAEKNKYERERKLR

The query sequence (length=607) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d5s:RN 607 607 1.0000 1.0000 1.0000 0.0 7ajt:UB, 7aju:UB, 7d4i:RN, 7d5t:RN, 7d63:RN, 6ke6:RN, 6lqp:RN, 6lqq:RN, 6lqr:RN, 6lqs:RN, 6lqt:RN, 6lqu:RN, 6lqv:RN, 6zqb:UB, 6zqc:UB, 6zqd:UB, 6zqg:UB
2 6zqa:UB 504 524 0.8303 1.0000 0.9618 0.0 6zqf:UB
3 7suk:ST 599 604 0.7694 0.7796 0.7732 0.0 5wlc:ST
4 6rxt:UB 512 402 0.1977 0.2344 0.2985 1.18e-48 5oql:B, 6rxu:UB, 6rxv:UB, 6rxx:UB, 6rxy:UB, 6rxz:UB
5 6rxt:UB 512 102 0.0593 0.0703 0.3529 2.86e-08 5oql:B, 6rxu:UB, 6rxv:UB, 6rxx:UB, 6rxy:UB, 6rxz:UB
6 7mqa:ST 570 390 0.1647 0.1754 0.2564 6.87e-25 7mq8:ST, 7mq9:ST
7 8va1:B 560 62 0.0280 0.0304 0.2742 0.18 8va1:A, 8va1:C, 8va1:D
8 6waa:H 656 156 0.0708 0.0655 0.2756 2.8 6waa:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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