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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSG
KLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANG
AHIAGLAVGLAMAFVDSL

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5f5b:A 182 178 1.0000 0.9780 1.0000 1.08e-126 8ab5:A, 8ab5:B, 5f5g:A, 5f5j:A, 5f5k:A, 4h1d:A, 5mt6:A, 5mt7:A, 5mt8:A, 5mtf:A, 6pj4:A, 6pj5:A, 6pj7:A, 6pj8:A, 6pj9:A, 6pja:A, 6pjp:A, 6pjq:A, 6pjr:A, 6pju:A, 4qnz:A, 4qo0:A, 4qo2:A, 3txt:A, 3ubb:A, 6vj8:A, 6vj9:A, 2xow:A, 6xro:A, 6xrp:A, 3zeb:A, 3zmh:A, 3zmi:A, 3zmj:A, 3zot:A
2 2nr9:A 192 177 0.4045 0.3750 0.4068 1.48e-41
3 6g9x:B 368 79 0.1292 0.0625 0.2911 2.7 6zgr:B, 6zgs:B, 6zgt:B, 6zgu:B
4 8bqd:a 87 16 0.0618 0.1264 0.6875 6.4 8bn3:D1, 8bqx:a, 8c83:a, 8cah:a, 8ccs:x, 8cf5:x, 8cku:x, 8cmj:x, 5dat:d1, 5dge:d1, 5dgv:d1, 6eml:a, 8eub:BV, 8evp:BV, 8evq:BV, 8evr:BV, 8evs:BV, 8evt:BV, 8ewb:BV, 8ewc:BV, 6fai:V, 6fyy:V, 6gq1:AL, 6gqv:AL, 6gsm:V, 6gsn:V, 8i7j:V, 5it7:V, 5it9:V, 3j77:21, 3j78:21, 3j80:V, 5juu:SB, 8k2d:SV, 8k82:SV, 5m1j:V2, 7mpi:BV, 7mpj:BV, 7n8b:BV, 5ndv:d1, 7nrd:Sa, 5obm:d1, 7osa:eS21, 7osm:eS21, 6q8y:a, 6rbd:V, 6rbe:V, 8rw1:V, 6s47:BW, 8s8d:V, 8s8e:V, 8s8f:V, 8s8i:V, 6snt:V, 6sv4:a, 6t4q:SV, 6t7t:SV, 6tnu:a, 4u3n:D1, 4u4n:D1, 4u4o:D1, 4u4y:D1, 4u50:d1, 4u53:D1, 4v6i:AT, 4v8y:AV, 4v8z:AV, 4v92:BV, 6xiq:AL, 6xir:AL, 6z6j:SV, 6z6k:SV, 7zrs:AV, 7zux:DV
5 5lq5:A 274 78 0.1292 0.0839 0.2949 6.6 5lq8:A
6 6zgs:A 404 79 0.1236 0.0545 0.2785 8.0 6g9x:A, 6zgr:A, 6zgt:A, 6zgu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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