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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGPIIAGKSESSELPRVEDRATFIYIEHAKINRVDSAVTVAEAKGVVRIPAAMIGVLLLGPGTDISHRAVELLGDTGTAL
VWVGEQGVRYYASGRALARSTRFLVKQAELVTNERSRLRVARRMYQMRFPTEDVSKLTMQQLRSHEGARVRRKYRELSKK
YNVPWKKRVYNPDDFAGGDPINQALSAAHVALYGLVHSVVAALGLSPGLGFVHTGHDRSFIYDVADLYKAEITVPIAFAV
AAEAEEGQDIGQLARLRTRDAFVDGKILKRMVKDLQTLLEIPEEGQIEAEPLSLWDDKEKLVPYGVNYS

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fyc:C 310 309 1.0000 0.9968 1.0000 0.0 8fy9:C, 8fy9:F, 8fya:B, 8fya:C, 8fya:F, 8fyb:B, 8fyb:C, 8fyb:E, 8fyb:F, 8fyc:E, 8fyc:B, 8fyd:B, 8fyd:E, 8fyd:F, 8fyd:C
2 8fy9:B 241 291 0.7767 0.9959 0.8247 2.26e-165 8fy9:E, 8fya:E, 8fyc:F
3 8hi1:A 289 287 0.6472 0.6920 0.6969 5.85e-152 8hi1:C
4 8hi1:D 244 275 0.5566 0.7049 0.6255 1.60e-120 8hi1:B
5 6kdv:B 283 290 0.3819 0.4170 0.4069 1.39e-68 6kdv:D, 6kdv:C, 6kdv:A
6 5dqz:B 301 287 0.3592 0.3688 0.3868 4.26e-62 5dlj:D, 5dlj:A, 5dlj:B, 5dlj:C, 5dqt:D, 5dqt:C, 5dqt:A, 5dqt:B, 5dqt:K, 5dqt:L, 5dqt:I, 5dqt:J, 5dqu:A, 5dqu:D, 5dqu:C, 5dqu:B, 5dqz:D, 5dqz:C, 5dqz:A, 5ds4:A, 5ds4:C, 5ds4:D, 5ds4:B, 5ds5:A, 5ds5:C, 5ds5:D, 5ds5:B, 5ds6:A, 5ds6:C, 5ds6:D, 5ds6:B, 3nke:C, 5vvj:A, 5vvj:B, 5vvj:C, 5vvj:D, 5vvk:C, 5vvk:D, 5vvk:A, 5vvk:B, 5vvl:C, 5vvl:D, 5vvl:A, 5vvl:B, 5wfe:A, 5wfe:B, 5wfe:C, 5wfe:D
7 8k21:E 295 272 0.1974 0.2068 0.2243 1.93e-14 8k21:d, 8k21:e, 8k21:D, 8k22:E, 8k22:d, 8k22:e, 8k22:D, 8k23:E, 8k23:d, 8k23:e, 8k23:D, 8k24:d, 8k24:e, 8k24:E, 8k24:D, 8k25:d
8 3god:A 320 308 0.2395 0.2313 0.2403 1.56e-11 8flj:A, 8flj:C, 8flj:D, 8flj:B, 3god:B
9 7cr6:C 325 134 0.1133 0.1077 0.2612 0.013 7cr6:B, 7cr6:D, 7cr6:A, 7cr8:J, 7cr8:K, 7cr8:L, 7cr8:I, 7cr8:R, 7cr8:S, 7cr8:T, 7cr8:Q, 7cr8:b, 7cr8:c, 7cr8:d, 7cr8:a, 7cr8:j, 7cr8:k, 7cr8:l, 7cr8:i, 7cr8:r, 7cr8:s, 7cr8:t, 7cr8:q, 7cr8:B, 7cr8:C, 7cr8:D, 7cr8:A
10 6opm:C 359 107 0.0777 0.0669 0.2243 1.3 6opm:A, 6opm:B, 6opm:D
11 6dts:A 379 63 0.0647 0.0528 0.3175 1.3 8dhd:A, 6dts:B, 2fnc:A
12 6sw9:U 149 69 0.0809 0.1678 0.3623 2.6 5jb3:U, 5jbh:U, 6swc:U, 6swe:U, 4v4n:BU, 4v6u:AU, 7zag:U, 7zah:U, 7zai:U, 7zhg:U
13 7mp4:A 534 51 0.0583 0.0337 0.3529 4.0 7mp4:B, 7mp4:C, 7mp4:D, 7mp4:E, 7mp4:F, 7mp4:G, 7mp4:H
14 8ch4:D 183 66 0.0550 0.0929 0.2576 4.1 8ch4:A, 8ch4:B, 8ch4:C
15 3vzx:B 228 51 0.0550 0.0746 0.3333 5.2 3vzx:A, 3vzy:A, 3vzy:B, 3vzz:A, 3vzz:B, 3w00:B
16 5ci5:A 393 45 0.0550 0.0433 0.3778 5.3 5ci5:B
17 7mi4:A 554 35 0.0485 0.0271 0.4286 6.1 7mi4:B, 7mi4:C, 7mi4:D, 7mi5:A, 7mi5:B, 7mi5:D, 7mi5:C, 7mi9:A, 7mi9:B, 7mi9:C, 7mi9:D, 7mib:A, 7mib:B, 7mib:C, 7mib:D, 7mid:A, 7mid:B
18 1um0:A 365 122 0.0939 0.0795 0.2377 6.5 1um0:D, 1um0:B, 1um0:C
19 3q2v:A 532 57 0.0712 0.0414 0.3860 6.6 1edh:A, 1edh:B, 1ff5:B, 1ff5:A, 3lne:A, 3lnf:A, 3lnf:B, 3lng:A, 3lng:B, 3lnh:A, 3lnh:B, 3lni:A, 3lni:B, 1q1p:A, 3q2l:A, 3q2l:B, 3q2n:A, 3q2n:B, 3q2v:B, 4qd2:E, 4qd2:J, 3qrb:A, 3qrb:B, 2qvf:B
20 6fh2:A 353 41 0.0550 0.0482 0.4146 7.1 6fh3:A, 6fh3:B
21 2ptx:A 431 64 0.0550 0.0394 0.2656 8.6 1oep:A, 2pty:A, 2ptz:A, 2pu0:A, 2pu1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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