Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELV
PLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVP
KVRYNEETGEVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEV
MYAVETAFKKAEEIRKLILEAVEKAKQ

The query sequence (length=267) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2pnz:B 267 267 1.0000 1.0000 1.0000 0.0
2 3m85:I 259 240 0.4944 0.5097 0.5500 1.62e-75 3m7n:I, 3m7n:G, 3m7n:H, 3m85:G, 3m85:H
3 4ba2:A 274 258 0.4532 0.4416 0.4690 2.08e-73 2c37:I, 2c37:U, 2c38:G, 2c38:I, 2c38:U, 2c38:W, 2jea:A
4 6d6q:C 265 256 0.3483 0.3509 0.3633 1.72e-50 6d6r:C
5 6d6q:A 287 267 0.3483 0.3240 0.3483 1.48e-41 6d6r:A
6 4ifd:A 300 270 0.3146 0.2800 0.3111 1.39e-37 6fsz:AA
7 2wnr:B 222 146 0.1536 0.1847 0.2808 4.93e-10 2wnr:D, 2wnr:F
8 2pnz:A 236 148 0.1685 0.1907 0.3041 1.28e-08 2po0:A, 2po1:A, 2po2:A
9 3m7n:E 248 261 0.2472 0.2661 0.2529 1.72e-08 3m7n:F, 3m7n:D, 3m85:F, 3m85:D, 3m85:E
10 2c39:D 248 95 0.1049 0.1129 0.2947 6.84e-08 4ba1:B, 4ba2:B, 2c37:B, 2c37:F, 2c37:N, 2c37:V, 2c37:X, 2c38:B, 2c38:F, 2c38:H, 2c38:J, 2c38:N, 2c38:V, 2c38:X, 2c39:B, 2c39:F, 2c39:H, 2c39:J, 2c39:L, 2c39:N, 2c39:P, 2c39:R, 2c39:T, 2c39:V, 2c39:X, 2jea:B
11 1r6m:A 236 248 0.2247 0.2542 0.2419 9.56e-08
12 3dd6:A 244 148 0.1536 0.1680 0.2770 1.62e-05
13 6d6q:B 241 162 0.1610 0.1784 0.2654 1.06e-04 6d6r:B
14 7ld5:A 587 49 0.0861 0.0392 0.4694 1.83e-04 7ld5:B, 7ld5:C
15 8wx0:A 597 49 0.0824 0.0369 0.4490 3.32e-04 8wx0:B, 8wx0:C
16 1e3p:A 645 56 0.0899 0.0372 0.4286 0.001
17 1e3p:A 645 141 0.1461 0.0605 0.2766 8.8
18 4aim:A 698 45 0.0749 0.0287 0.4444 0.004 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
19 5yjj:A 442 152 0.1685 0.1018 0.2961 0.005 5yjj:B, 5yjj:C, 5yjj:D, 5yjj:E, 5yjj:F
20 6fsz:BB 244 152 0.1311 0.1434 0.2303 0.070 4ifd:B, 5jea:B, 5k36:B, 8qcf:C
21 3gme:A 482 152 0.1461 0.0809 0.2566 0.32
22 7ogk:A 695 38 0.0599 0.0230 0.4211 0.52 3gcm:A, 3gcm:B, 3gcm:C, 3h1c:A, 3h1c:B, 3h1c:C, 3h1c:K, 3h1c:G, 3h1c:I, 3h1c:M, 3h1c:O, 3h1c:R, 3h1c:T, 3h1c:V, 3h1c:X, 7ogk:B, 7ogk:C, 7ogm:L, 7ogm:N, 7ogm:O
23 4oo1:E 255 206 0.1498 0.1569 0.1942 0.60
24 6d6q:F 252 76 0.0787 0.0833 0.2763 1.5 6d6r:F
25 6s48:A 235 56 0.0749 0.0851 0.3571 8.5 6g3b:A, 6g3b:B, 6s48:B, 6s58:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218