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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGEIWISPQGNDLNDGTRPSPKATLTSALRQAREWRRTDDERVRGGITICMEGGTYALYEPVFIRPEDSGTEDSPTVIRP
VADEKVVLSGGIRIGGWKKQGKLWVADVPMFNGRPLDFRQLWVNGKKAVRARDVEDFEKMNRICSVDEKNEILYVPAVAI
RRLVDGKGALKAKYAEMVLHQMWCVANLRIRSVELAGDSAAIRFHQPESRIQFEHPWPRPMVTTDGHNSAFYLTNARELL
DVAGEWYHDIDARKVYYYPREGEKLQDAGTEVIVPAIETLIQVKGTFDRPVSHIRFEKITFSHTTWMRPSEKGHVPLQAG
MYLTDGYRIDPKMERDYLNHPLDNQGWLGRPAAAVSVAAANQIDFERCRFDHLGSTGLDYEEAVQGGVVRGCLFRDIAGN
GLVVGSFSPAAHETHLPYDPTDLREVCAHQQISNCYFTEVGNEDWGCLAILAGYVKDINIEHNEICEVPYSGISLGWGWT
QTVNCMRNNRVHANLIHHYAKHMYDVAGVYTLGSQPKSYVTENCVHSIYKPGYVHDPNHWFYLYTDEGSSFITVRDNWTE
GEKYLQNANGPGNVWENNGPQVDTVIRERAGLEAEYRDL

The query sequence (length=599) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5mqp:E 602 599 1.0000 0.9950 1.0000 0.0 5mqp:A, 5mqp:B, 5mqp:C, 5mqp:D, 5mqp:F, 5mqp:G, 5mqp:H
2 3vsu:A 638 112 0.0467 0.0439 0.2500 0.039 3vsu:B, 3vsu:C, 3vsu:D, 3vsv:A, 3vsv:B, 3vsv:D, 3vsv:C
3 8s65:B 411 42 0.0234 0.0341 0.3333 6.0 8s65:A
4 5vao:B 129 35 0.0200 0.0930 0.3429 7.9 6e5x:A, 5vao:D, 5vao:A, 5vao:C, 5vap:A, 5vap:B
5 8fl0:ST 199 52 0.0234 0.0704 0.2692 8.1 8ir1:R, 8ir3:R
6 6nff:A 794 118 0.0518 0.0390 0.2627 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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