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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGEARLEEAVNRWVLKFYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDM
EAELTPLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK
NLAHPVIQNFSYETFQQKMLRFLESHLDDAEPYLLTMAKKALK

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3bu8:B 207 203 1.0000 0.9807 1.0000 2.64e-151 3bu8:A, 3bua:A, 3bua:D, 3bua:B, 3bua:C, 7c5d:A, 7c5d:B, 6j67:A, 4m7c:A, 4m7c:B, 4rqi:A, 4rqi:B, 4rqi:C, 4rqi:D, 5wqd:A, 5wqd:B, 5wqd:C, 5wqd:D, 5wqd:E, 5wqd:F, 5wqd:G
2 8w8g:C 208 192 0.2611 0.2548 0.2760 1.75e-20 3bqo:A, 8w8g:A, 8w8g:B, 8w8g:D, 5wir:B, 5wir:A, 5xup:A, 5xup:B
3 6g79:S 262 89 0.1133 0.0878 0.2584 0.078
4 6skf:BD 344 113 0.1330 0.0785 0.2389 0.078 6skg:BD, 6th6:BD
5 5v54:B 383 90 0.1133 0.0601 0.2556 0.099 7c61:A, 4iaq:A, 4iar:A, 5v54:A
6 6muu:F 323 49 0.0788 0.0495 0.3265 1.0
7 4zxf:C 307 28 0.0739 0.0489 0.5357 1.8
8 3o5b:A 479 63 0.0837 0.0355 0.2698 2.2 3o5b:B, 3o80:A, 3o8m:A
9 6ks6:Q 548 75 0.0936 0.0347 0.2533 3.0 6ks6:q, 4v81:H, 4v81:P, 4v81:h, 4v81:p, 4v8r:AQ, 4v8r:Aq, 4v8r:BQ, 4v8r:Bq, 4v94:H, 4v94:P, 4v94:h, 4v94:p, 7ylw:Q, 7ylw:q, 7ylx:Q, 7ylx:q, 7yly:Q, 7yly:q
10 8df7:A 850 80 0.1182 0.0282 0.3000 5.0 8df7:B, 8df8:A, 8df8:B, 8df9:B, 8dfb:A, 8dfb:B, 4gfj:A, 3m6k:B, 3m6z:A, 3m6z:B
11 8df9:A 781 80 0.1182 0.0307 0.3000 5.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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