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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGCSDVSTELKTPVYKTKLTAEEIRNSAFKPEFPKQYASYERNDETTVMTEYKGSVPFNKNDNVNPLPEGYRHAQPYLKN
LWLGYPFMYEYREARGHTYAIQDFLHIDRINRYAEKGGLPATCWNCKTPKMMEWVKESGDGFWAKDVNEFRDKIDMKDHT
IGCATCHDPQTMELRITSVPLTDYLVSQGKDPKKLPRNEMRALVCGQCHVEYYFNGPTMGVNKKPVFPWAEGFDPADMYR
YYDKHGDLQVKGFEGKFADWTHPASKTPMIKAQHPEYETWINGTHGAAGVTCADCHMSYTRSDDKKKISSHWWTSPMKDP
EMRACRQCHSDKTPDYLKSRVLFTQKRTFDLLLAAQEVSVKAHEAVRLANEYQGAKAAGYDDLMIQAREMVRKGQFFWDY
VSAENSVGFHNPAKALDTLAQSQQFSQKAIDLAMEATQYGIGKDLSGDIKTIVPPILKMNRKLQQDPEFMKTHKWFQYLP
VLPKADQVWDGQKRLVSA

The query sequence (length=498) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2j7a:B 498 498 1.0000 1.0000 1.0000 0.0 2j7a:A, 2j7a:D, 2j7a:E, 2j7a:G, 2j7a:H, 2j7a:J, 2j7a:K, 2j7a:M, 2j7a:N, 2j7a:P, 2j7a:Q, 2vr0:A, 2vr0:B, 2vr0:D, 2vr0:E
2 1oah:B 482 482 0.6667 0.6888 0.6888 0.0 1oah:A
3 1gu6:A 441 491 0.3032 0.3424 0.3075 3.40e-60 1gu6:G, 1gu6:C, 1gu6:E, 3l1t:A, 3l1t:B, 3l1t:C, 3l1t:D, 2rdz:A, 2rdz:B, 2rdz:C, 2rdz:D, 2rf7:A, 2rf7:B, 2rf7:C, 2rf7:D, 3tor:A, 3tor:D, 3tor:B, 3tor:C, 4wjy:A, 4wjy:B
4 6p73:A 439 484 0.3193 0.3622 0.3285 4.58e-60 6p73:B, 3ubr:A, 3ubr:B
5 3bnf:A 471 442 0.2892 0.3057 0.3258 1.77e-56 3bng:A, 3bnh:A, 3bnj:A, 2e80:A, 2e81:A, 1fs7:A, 1fs8:A, 1fs9:A
6 1qdb:A 473 381 0.2631 0.2770 0.3438 1.06e-53 1qdb:B, 1qdb:C
7 8bcx:D 444 407 0.2671 0.2995 0.3268 8.01e-52 8bcx:A, 8bcx:B, 8bcx:C
8 6v0a:B 444 404 0.2349 0.2635 0.2896 9.62e-46 6v0a:A, 6v0a:C, 6v0a:D, 6v0a:E, 6v0a:F
9 8rv0:Y 495 427 0.2289 0.2303 0.2670 8.43e-36 8rvm:YYY, 8rxu:AAA, 8rxu:MMM, 8rxu:YYY
10 3f29:B 520 443 0.2289 0.2192 0.2573 1.40e-32 3d1i:A, 3d1i:B, 3f29:A, 3fo3:A, 3fo3:B, 3gm6:A, 3gm6:B, 4l38:A, 4l38:B, 4l3x:A, 4l3x:B, 4l3y:A, 4l3y:B, 4l3z:A, 4l3z:B, 3lg1:A, 3lg1:B, 3lgq:A, 3lgq:B, 3mmo:A, 3mmo:B, 2ot4:A, 2ot4:B, 3owm:A, 3owm:B, 4q0t:A, 4q0t:B, 4q17:A, 4q17:B, 4q1o:A, 4q1o:B, 4q4u:A, 4q4u:B, 4q5b:A, 4q5b:B, 4q5c:A, 4q5c:B, 3rkh:A, 3rkh:B, 3s7w:A, 3s7w:B, 3sce:A, 3sce:B, 3uu9:A, 3uu9:B, 2zo5:A, 2zo5:B
11 3sxq:A 519 450 0.2390 0.2293 0.2644 6.30e-32 3sxq:B, 3ttb:A, 3ttb:B
12 8ost:A 390 52 0.0422 0.0538 0.4038 0.37
13 6i5b:A 484 59 0.0422 0.0434 0.3559 0.65 6i5b:B
14 8gym:t 156 98 0.0542 0.1731 0.2755 1.2 8b6h:EL, 8b6h:El, 8bqs:EL, 8bqs:El, 8gym:T
15 6mve:A 680 37 0.0261 0.0191 0.3514 2.4 6cgl:A, 6cgl:B, 6cgn:A, 6mt9:A, 6mv9:A, 6mv9:B, 6mw3:D, 6mw3:C, 6myx:C, 6myx:D, 6myx:I, 6myx:J
16 2gat:A 66 38 0.0281 0.2121 0.3684 3.0 1gat:A, 1gau:A, 3gat:A
17 6m0q:A 504 97 0.0522 0.0516 0.2680 3.6 4fas:A, 4fas:C, 4fas:B, 1fgj:A, 1fgj:B, 6m0p:A, 6m0p:C, 6m0p:E, 6m0q:C, 6m0q:E, 6m0q:G, 6m0q:I, 6m0q:K, 4n4n:A, 4n4n:C, 4n4n:E, 4n4o:A, 4n4o:C, 4n4o:E
18 3wdr:A 330 49 0.0281 0.0424 0.2857 3.9
19 6iw6:A 438 44 0.0361 0.0411 0.4091 4.9 6iw6:B
20 6r2q:A 265 142 0.0663 0.1245 0.2324 8.2
21 8jze:b 663 32 0.0261 0.0196 0.4062 9.7 8jzf:b

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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