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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AGAARSLSRFRGCLAGALLGDCVGSFYEVDLTSVLRHVQSLTEALYYTDDTAMARALVQSLLAKEAFDEVDMAHRFAQEY
KKDPDRGYGAGVVTVFKKLLNPKCRDVFEPARAQFNGKGSYGNGGAMRVAGISLAYSSVQDVQKFARLSAQLTHASSLGY
NGAILQALAVHLALQGESSSEHFLKQLLGHMEDLEGDAQSVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELG
NGIAAFESVPTAIYCFLRCMEPDPEIPSAFNSLQRTLIYSISLGGDTDTIATMAGAIAGAYYGMDQVPESWQQSCEGYEE
TDILAQSLHRVFQKS

The query sequence (length=335) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6d3a:A 347 347 0.9940 0.9597 0.9597 0.0 7akr:AAA, 7akr:BBB, 7akr:CCC, 7akr:DDD, 7aks:AAA, 7aks:CCC, 7aks:EEE, 7aks:GGG, 7arw:A, 7arw:B, 6d36:C, 6d36:D, 6d36:A, 6d36:B, 6d3a:C, 6d3a:D, 6d3a:B, 2foz:A, 2fp0:A, 2fp0:B, 2g4k:A, 7l9f:C, 7l9f:D, 7l9f:A, 7l9f:B, 7l9h:C, 7l9h:D, 7l9h:A, 7l9h:B, 7l9i:C, 7l9i:D, 7l9i:A, 7l9i:B, 2qty:A, 2qty:B, 5zqy:A
2 6g1q:B 331 342 0.6448 0.6526 0.6316 2.97e-149 7aqm:A, 7aqm:B, 6g1p:A, 6g1p:B, 6g1q:A, 6hgz:A, 6hgz:B, 6hh3:A, 6hh3:B, 6hh4:A, 6hh4:B, 6hh5:A, 6hh5:B, 6hoz:A, 6hoz:B
3 1t5j:A 301 340 0.2358 0.2625 0.2324 9.04e-16
4 2yzv:A 286 332 0.2418 0.2832 0.2440 1.17e-14
5 6dre:A 365 340 0.2269 0.2082 0.2235 1.23e-08 6drh:C
6 3o5t:A 295 333 0.2209 0.2508 0.2222 5.30e-06 3g9d:A, 3g9d:B, 5ovo:A
7 2woc:A 291 56 0.0597 0.0687 0.3571 1.32e-05 2woc:B, 2woc:C, 2wod:A, 2wod:B, 2woe:A, 2woe:C, 2woe:B
8 2woc:A 291 131 0.1134 0.1306 0.2901 0.001 2woc:B, 2woc:C, 2wod:A, 2wod:B, 2woe:A, 2woe:C, 2woe:B
9 4zqb:B 316 141 0.1015 0.1076 0.2411 0.084 4zqb:A
10 3mg9:A 255 78 0.0687 0.0902 0.2949 1.6 3mgc:A
11 5epo:A 261 117 0.0866 0.1111 0.2479 2.5 5epo:B, 5epo:C, 5epo:D
12 4ghl:A 132 101 0.0716 0.1818 0.2376 4.3 4gha:A, 4gha:E, 4gha:G, 4gha:C, 4ghl:D, 4ghl:B, 4ghl:C
13 6g2a:A 361 129 0.1075 0.0997 0.2791 6.2 6g28:A, 3hfw:A, 6iux:A
14 8ckh:A 281 57 0.0597 0.0712 0.3509 7.0 8ckh:B
15 2a5z:C 244 77 0.0776 0.1066 0.3377 8.7 2a5z:A, 2a5z:B
16 6sna:A 265 61 0.0448 0.0566 0.2459 9.1 6sna:B, 6sna:F, 6sna:G, 6sna:J, 6sna:K, 6sna:N, 6sna:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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