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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRDKYRYFACLMRARFDEHKNEKDMVKATQLLRQAEEEFWYGQHPQPYI
FPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFAKREQWKRLRRESWEREVKQLQEETPPGGPRTEALPPARKEG
DLPPLWWHIVTRPRERPM

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7v2c:p 178 178 1.0000 1.0000 1.0000 7.78e-132 5gup:p, 5lnk:t, 8q0a:n, 8q0f:n, 8q0j:n, 8q0m:n, 8q0o:n, 8q0q:n, 8q1p:n, 8q1u:n, 8q1y:n, 8q25:n, 8q45:n, 8q46:n, 8q47:n, 8q48:n, 8q49:n, 8q4a:n, 6q9b:B9, 6qa9:B9, 6qbx:B9, 6qc2:B9, 6qc3:B9, 6qc4:B9, 6qc5:B9, 6qc6:B9, 6qc7:B9, 6qc8:B9, 6qca:B9, 6qcf:B9, 7qsd:n, 7qsk:n, 7qsl:n, 7qsm:n, 7qsn:n, 7qso:n, 7r41:n, 7r42:n, 7r43:n, 7r44:n, 7r45:n, 7r46:n, 7r47:n, 7r48:n, 7r4c:n, 7r4d:n, 7r4f:n, 7r4g:n, 8ud1:1n, 8ueo:1n, 8uep:1n, 8ueq:1n, 8uer:1n, 8ues:1n, 8uet:1n, 8ueu:1n, 8uev:1n, 8uew:1n, 8uex:1n, 8uey:1n, 8uez:1n, 8ugh:1n, 8ugi:1n, 8ugj:1n, 8ugn:1n, 8ugn:5n, 8ugr:1n, 8ugr:5n, 7v2d:p, 7v2e:p, 7v2f:p, 7v2h:p, 7v2k:p, 7v2r:p, 7v30:p, 7v31:p, 7v32:p, 7v33:p, 7v3m:p, 7vbl:p, 7vbp:p, 7vc0:p, 7vwl:p, 7vxs:p, 7vy1:p, 7vy9:p, 7vye:p, 7vyg:p, 7vyi:p, 7vys:p, 7vz8:p, 7vzv:p, 7vzw:p, 7w00:p, 7w0h:p, 7w0r:p, 7w0y:p, 7w1o:p, 7w1p:p, 7w1t:p, 7w1u:p, 7w1v:p, 7w1z:p, 7w20:p, 7w2k:p, 7w2l:p, 7w2r:p, 7w2u:p, 7w2y:p, 7w31:p, 7w32:p, 7w35:p, 7w4c:p, 7w4d:p, 7w4e:p, 7w4f:p, 7w4g:p, 7w4j:p, 7w4k:p, 7w4l:p, 7w4m:p, 7w4n:p, 7w4q:p, 5xtc:p, 5xtd:p, 5xth:p, 5xti:p, 5xti:Bp, 7zd6:t, 7zdh:t, 7zdj:t, 7zdm:t, 7zdp:t, 7zeb:t, 6zka:t, 6zkb:t, 6zkc:t, 6zkd:t, 6zke:t, 6zkf:t, 6zkg:t, 6zkh:t, 6zki:t, 6zkj:t, 6zkk:t, 6zkl:t, 6zkm:t, 6zkn:t, 6zko:t, 6zkp:t, 6zkq:t, 6zkr:t, 6zks:t, 6zkt:t, 6zku:t, 6zkv:t
2 7b93:n 178 177 0.8764 0.8764 0.8814 2.91e-116 7ak5:n, 7ak6:n, 8c2s:n, 8ca3:n, 8ca5:n, 6g2j:n, 6g72:n, 8iao:n, 8iaq:n, 8ib4:n, 8ib6:n, 8ib9:n, 8ibb:n, 8ibd:n, 8ibf:n, 8ic2:n, 8ic4:n, 8olt:n, 8om1:n, 7psa:n, 8pw5:n1, 8pw6:n1, 8pw7:n1, 8rgp:n, 8rgq:n, 8rgr:n, 8rgt:n, 6zr2:n, 6ztq:n
3 8b9z:n 134 132 0.3483 0.4627 0.4697 1.47e-31 8ba0:n, 8esw:B9, 8esz:B9
4 7zm7:R 98 83 0.1742 0.3163 0.3735 1.14e-12 7zm8:R, 7zmb:R, 7zme:R, 7zmg:R, 7zmh:R
5 8e73:B9 111 91 0.1910 0.3063 0.3736 2.83e-12
6 7aqw:n 109 83 0.1517 0.2477 0.3253 3.44e-11 7ar7:n, 7ar8:n, 7arb:n, 8beh:n, 8bpx:n, 8bq5:n, 8bq6:n
7 7b0n:n 108 83 0.1236 0.2037 0.2651 5.87e-07 7o6y:R, 7o71:R, 6rfq:R, 6rfr:R, 6y79:R, 6yj4:n
8 7ar9:n 120 88 0.1348 0.2000 0.2727 6.06e-05 7ard:n
9 8otz:EV 425 66 0.1236 0.0518 0.3333 0.19
10 6zu5:LT0 160 38 0.0843 0.0938 0.3947 1.1
11 3qu1:A 168 69 0.1124 0.1190 0.2899 1.7 3qu1:B
12 8gym:b9 188 18 0.0618 0.0585 0.6111 7.0 8b6f:AQ, 8bqs:AQ, 8gym:B9, 7tgh:B9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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