Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AFKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKRLALAPEEGLDKAPA
WLYEGMARAFREGAARLAVSGSDPKALEGLPPEKVGRAQKANARAYKPALEAITEFVTNWTIVPFAHPGWARAVFPGLPE
EEAVRRLWEAIFQATPIAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLCNPNLPT
EEVFTAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLRRLLDTDEGARRLGEVALVPADNPIAK
TGLVFFDTLFDENAASHIAFGQAYQENLEGGEAFRKRGGNESLVHVDWMIGSEEMDVDGLYEDGTRTPLMRRGRWVV

The query sequence (length=397) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ayi:A 397 397 1.0000 1.0000 1.0000 0.0 2ayi:B, 2ayi:C, 2ayi:D, 2ayi:E
2 4icq:A 413 406 0.4207 0.4044 0.4113 1.37e-104 4icq:B, 4icr:A, 4icr:B, 4ics:A, 4ics:B
3 1zjc:A 413 408 0.3904 0.3753 0.3799 8.93e-98
4 6t0q:A 340 80 0.0504 0.0588 0.2500 2.1 6kbj:A, 6kbq:A, 6kc2:A, 6li7:A, 6lik:A, 6t1d:A, 6t1d:B, 6t1d:C, 6t1d:D, 6t1d:E, 6t1d:F
5 1taq:A 807 112 0.0781 0.0384 0.2768 7.1 4bwj:A, 4bwm:A, 4c8k:A, 4c8l:A, 4c8m:A, 4c8n:A, 4c8o:A, 4cch:A, 4df4:A, 4df8:A, 4dfj:A, 4dfk:A, 4dfm:A, 4dfp:A, 4dle:A, 4dlg:A, 5e41:A, 4elt:A, 4elu:A, 4elv:A, 6fbc:A, 6fbd:A, 6fbe:A, 6fbf:A, 6fbg:A, 6fbh:A, 6fbi:A, 2ktq:A, 3ktq:A, 4ktq:A, 5ktq:A, 3lwl:A, 3lwm:A, 3m8r:A, 3m8s:A, 4n5s:A, 5nkl:A, 5o7t:A, 3ojs:A, 3oju:A, 7owf:A, 5oxj:A, 3po4:A, 3po5:A, 3py8:A, 6q4u:A, 6q4v:A, 1qss:A, 1qsy:A, 1qtm:A, 3rr7:A, 3rr8:A, 3rrg:A, 3rrh:A, 3rtv:A, 3sv3:A, 3sv4:A, 3syz:A, 3sz2:A, 5szt:A, 3t3f:A, 1tau:A, 5w6k:A, 5w6q:C, 5w6q:G, 4xiu:A, 5ytc:A, 5ytd:A, 5yte:A, 5ytf:A, 5ytg:A, 5yth:A, 5z3n:A
6 3lwu:A 372 31 0.0277 0.0296 0.3548 8.6
7 1pn3:A 391 69 0.0705 0.0716 0.4058 9.0 1pn3:B, 1pnv:B, 1pnv:A
8 8wbu:A 391 55 0.0403 0.0409 0.2909 9.3 7d5g:A, 8wbv:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218