Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AFIPYAGAQFEPEEMLSKSAEYYQFMDHRRTVREFSNRAIPLEVIENIVMTASTAPSGAHKQPWTFVVVSDPQIKAKIRQ
AAEKEEFESYNGNEWLEDLQPFGTDWHKPFLEIAPYLIVVFRKAYDVLPDGTQRKNYYVQESVGIACGFLLAAIHQAGLV
ALTHTPSPMNFLQKILQRPENERPFLLVPVGYPAEGAMVPDLQRKDKAAVMVVYH

The query sequence (length=215) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ko8:B 218 218 1.0000 0.9862 0.9862 7.75e-161 5ko7:A, 5ko8:A, 5krd:A, 5krd:B
2 5ko7:B 200 215 0.9209 0.9900 0.9209 6.98e-143
3 4ttc:A 220 217 0.4558 0.4455 0.4516 5.63e-65 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
4 4ttb:A 189 216 0.4233 0.4815 0.4213 7.10e-53 4ttb:B
5 3tnz:A 222 217 0.4465 0.4324 0.4424 3.77e-52 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
6 3gb5:A 185 216 0.4093 0.4757 0.4074 2.15e-45 3to0:A, 3to0:B
7 6pz0:A 185 178 0.2884 0.3351 0.3483 8.60e-31 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
8 4dn2:A 191 179 0.2558 0.2880 0.3073 9.61e-13 4dn2:B
9 4eo3:A 321 195 0.2465 0.1651 0.2718 1.42e-12 4eo3:B
10 4g8s:A 182 178 0.2558 0.3022 0.3090 7.00e-12 4g8s:B
11 3kwk:A 168 170 0.2000 0.2560 0.2529 2.21e-09
12 3m5k:A 168 172 0.1860 0.2381 0.2326 5.19e-08 3m5k:B
13 3gfa:A 197 54 0.0837 0.0914 0.3333 3.95e-07 3gfa:B
14 3gag:A 206 183 0.1953 0.2039 0.2295 5.21e-07 3gag:B, 3gag:C, 3gag:D
15 4qlx:A 217 60 0.1163 0.1152 0.4167 6.64e-07 4qlx:B, 4qly:A, 4qly:B, 4qly:C, 4qly:D
16 3ek3:A 187 200 0.2233 0.2567 0.2400 7.31e-07
17 8cqt:B 164 176 0.1907 0.2500 0.2330 1.47e-06 8cqt:A
18 3gbh:B 213 67 0.0930 0.0939 0.2985 1.83e-06 3gbh:A, 3gbh:C, 3gbh:D
19 3eo8:A 219 114 0.1535 0.1507 0.2895 2.47e-06 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
20 1nox:A 200 54 0.0977 0.1050 0.3889 5.57e-06
21 5j62:B 209 55 0.0884 0.0909 0.3455 8.82e-06 5j62:A
22 4xoq:A 204 186 0.2140 0.2255 0.2473 1.48e-05 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
23 3e10:B 167 174 0.2093 0.2695 0.2586 3.60e-05 3e10:A
24 3gr3:A 226 91 0.1070 0.1018 0.2527 4.04e-05 3gr3:B
25 5j6c:A 173 180 0.1767 0.2197 0.2111 1.44e-04 5j6c:B
26 2isj:A 219 80 0.1256 0.1233 0.3375 1.64e-04 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
27 7dp0:A 223 51 0.0837 0.0807 0.3529 4.25e-04 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
28 3ge5:A 176 64 0.0884 0.1080 0.2969 5.66e-04 3ge5:B
29 3ge6:A 210 61 0.0837 0.0857 0.2951 8.41e-04 3ge6:B
30 3n2s:A 248 65 0.0791 0.0685 0.2615 0.001 3n2s:B, 3n2s:C, 3n2s:D
31 8qyg:B 225 53 0.0837 0.0800 0.3396 0.001 8q5g:A, 8q5g:B, 8qyg:A
32 3koq:A 173 61 0.0698 0.0867 0.2459 0.002 3h4o:A, 3koq:B, 3koq:C, 3koq:D
33 3qdl:A 178 137 0.1628 0.1966 0.2555 0.002 3qdl:B, 3qdl:C, 3qdl:D
34 3e39:A 175 53 0.0791 0.0971 0.3208 0.006 3e39:B
35 6wt2:A 221 53 0.0791 0.0769 0.3208 0.007 6wt2:B, 6wt2:C, 6wt2:D
36 8uc3:A 180 192 0.2419 0.2889 0.2708 0.012 8uc3:B
37 2wzv:B 223 55 0.0930 0.0897 0.3636 0.012 2wzv:A, 2wzw:A, 2wzw:B
38 2i7h:A 187 40 0.0558 0.0642 0.3000 0.014 2i7h:B, 2i7h:C, 2i7h:D
39 7tmf:B 183 106 0.1209 0.1421 0.2453 0.024 7tmf:A, 7tmg:A, 7tmg:B
40 2b67:A 201 68 0.0791 0.0846 0.2500 0.042 2b67:B, 2b67:C, 2b67:D
41 3bem:B 210 64 0.0930 0.0952 0.3125 0.055 3bem:A
42 5j8d:A 216 55 0.0744 0.0741 0.2909 0.12 5j8d:B, 5j8d:C, 5j8d:D, 5j8g:A, 5j8g:B, 5j8g:C, 5j8g:D, 1kqb:A, 1kqb:B, 1kqb:C, 1kqb:D, 1kqc:A, 1kqc:B, 1kqc:C, 1kqc:D, 1kqd:A, 1kqd:B, 1kqd:C, 1kqd:D, 1nec:A, 1nec:B, 1nec:C, 1nec:D
43 2fre:A 200 43 0.0791 0.0850 0.3953 0.14 2fre:B
44 3pxv:B 189 76 0.0977 0.1111 0.2763 0.21 3pxv:A, 3pxv:C, 3pxv:D
45 6czp:A 219 56 0.0744 0.0731 0.2857 0.26 6czp:B, 6czp:C, 6czp:D, 6czp:E, 6czp:F, 6czp:G, 6czp:H, 7uwt:A, 7uwt:B
46 1ds7:A 217 55 0.0744 0.0737 0.2909 0.28 8c5e:A, 8c5e:B, 8c5f:A, 8c5f:B, 8c5p:A, 8c5p:B, 8ccv:A, 8ccv:B, 8cj0:A, 8cj0:B, 1ds7:B, 1icr:A, 1icr:B, 1icu:A, 1icu:B, 1icu:C, 1icu:D, 1icv:A, 1icv:B, 1icv:C, 1icv:D, 1idt:A, 1idt:B, 8og3:A, 8og3:B, 1oo5:A, 1oo5:B, 1oo6:A, 1oo6:B, 1oon:A, 1oon:B, 1ooq:A, 1ooq:B, 8qes:A, 8qes:C, 8qes:B, 8qes:D, 8qpo:A, 8qpo:B, 8qpo:C, 8qpo:G, 8qpo:D, 8qpo:E, 8qpo:F, 8qpo:H, 3x21:A, 3x21:B, 3x21:C, 3x21:D, 3x21:E, 3x21:F, 3x21:G, 3x21:H, 3x21:I, 3x21:J, 3x22:A, 3x22:B, 7x32:A, 7x32:C, 7x32:B, 7x32:H, 7x32:D, 7x32:F, 7x32:E, 7x32:G, 7xww:B, 7xww:A, 7xww:H, 7xww:I, 1yki:A, 1yki:B, 1yki:C, 1yki:D, 1ylr:A, 1ylr:B, 1ylu:A, 1ylu:B
47 7jh4:A 223 52 0.0605 0.0583 0.2500 0.35 7jh4:B, 7jh4:C, 7jh4:D, 7jh4:E
48 3eof:A 248 185 0.2093 0.1815 0.2432 0.39 3eof:B
49 8dor:A 217 28 0.0558 0.0553 0.4286 0.41 8dor:B, 8dor:C, 8dor:D
50 7s14:B 223 54 0.0605 0.0583 0.2407 0.43 7ldq:A, 7rzl:A, 7rzl:B, 7rzp:A, 7rzp:B, 7s14:A, 7s14:C, 7s14:D, 7s1a:A, 7s1a:B, 7t2z:A, 7t2z:B, 7t33:A, 7t33:B
51 4nh0:A 861 38 0.0698 0.0174 0.3947 0.50 4n1a:A, 4n1a:B, 4n1a:C, 4n1a:E, 4nh0:B
52 8cqs:B 194 202 0.1860 0.2062 0.1980 0.85 8cqs:A
53 5uu6:C 236 58 0.0651 0.0593 0.2414 2.0 5uu6:A, 5uu6:B, 5uu6:D
54 2hay:D 222 56 0.0791 0.0766 0.3036 2.4 2hay:A, 2hay:B, 2hay:C
55 3bm1:A 177 49 0.0605 0.0734 0.2653 2.7 3bm1:B
56 6tgh:A 410 58 0.0930 0.0488 0.3448 2.8 6tgh:C, 6tgh:B, 6tgh:D, 6ti1:A, 6ti1:C, 6ti3:A, 6ti3:C, 6ti3:B, 6ti3:D, 6ti4:A, 6ti4:C, 4wxf:A, 4wxf:C, 4wxg:A, 4wxg:C, 6yrw:A, 6yrw:C, 6yrw:B, 6yrw:D
57 4hlu:A 265 21 0.0465 0.0377 0.4762 9.1 4hlu:B, 4zir:A
58 7zr1:D 780 92 0.1070 0.0295 0.2500 9.7 7zr1:C

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218