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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AFGITTSSSAYVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSSQGSHIGSGLGSATVTATQSGDYIKVTCVTDTLTQ
YMVVHNGDPIIHMATYITAEPSIGELRFIARLNSDLLPNEEPFGDVSTTADGTAIEGSDVFLVGSETRSAFYSSERFIDD
QRHCIAGDAHRVCMILNQYESSSGGPFHRDINSNNGGSYNALYWYMNSGHVQTESYRMGLHGPYSMYFSRSGTPSTSIDT
SFFADLDIKGYVAASGRGKVAGTASGADSSMDWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATSSV
TVSAGSTTTKNISGSVKTGTTIFKIGEWDGQPTGFRNAANQLRMHPSDSRMSSWGPLTYTVGSSALTDFPMAVFKSVNNP
VTIKFTATSAQTGAATLRIGTTLSFAGGRPQATINSYTGSAPAAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNT
ITINVISGSSGDTYLSPNFIFDCVELFQ

The query sequence (length=508) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3njv:A 508 508 1.0000 1.0000 1.0000 0.0 3njx:A, 1nkg:A, 2xhn:A, 2xhn:B
2 7kn1:A 336 82 0.0472 0.0714 0.2927 0.011 7kn1:B
3 8jfs:A 87 70 0.0374 0.2184 0.2714 0.76 8jfs:B
4 6j7u:A 247 150 0.0768 0.1579 0.2600 2.8 6j7u:B, 6j7u:C, 6j7u:D
5 8c51:A 449 93 0.0669 0.0757 0.3656 6.2 8c51:B, 8c53:A, 8c53:B, 8cgy:A, 8cgy:B, 6rfu:A, 6rfu:B
6 7qe7:K 531 98 0.0394 0.0377 0.2041 9.1 5a31:J, 5a31:K, 5g04:J, 5g04:K, 5g05:J, 5g05:K, 9gaw:Q, 9gaw:K, 3hym:B, 3hym:D, 3hym:F, 3hym:H, 3hym:J, 3hym:L, 5lcw:J, 5lcw:K, 8pkp:Q, 8pkp:K, 6q6g:Q, 6q6g:K, 6q6h:Q, 6q6h:K, 7qe7:Q, 8s4g:Q, 8s4g:K, 6tlj:J, 6tlj:K, 6tm5:J, 6tm5:K, 6tnt:J, 6tnt:K, 4ui9:J, 4ui9:K
7 6z42:A 336 50 0.0315 0.0476 0.3200 9.2 6z42:B, 6z42:C, 6z42:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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