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BioLiP
>protein
AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTADDKQPYEKKAAKLKEKY

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2gzk:A 159 55 1.0000 0.3396 0.9818 2.64e-33 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
2 2gzk:A 159 59 0.3519 0.1195 0.3220 0.025 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
3 6cik:N 90 54 0.9630 0.5778 0.9630 3.90e-32 6cg0:N, 6cim:N
4 6cij:N 133 54 0.9630 0.3910 0.9630 3.52e-31 5zdz:N, 5ze1:N, 5ze2:N
5 5ze0:N 118 43 0.6852 0.3136 0.8605 6.73e-19 1ckt:A
6 1j5n:A 93 55 0.4444 0.2581 0.4364 7.16e-10
7 1e7j:A 74 54 0.4259 0.3108 0.4259 1.10e-08 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
8 5jh0:D 157 55 0.3519 0.1210 0.3455 3.81e-04 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
9 5jh0:D 157 34 0.1852 0.0637 0.2941 0.31 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
10 6t78:A 77 55 0.2963 0.2078 0.2909 0.003 6t78:B, 3u2b:C
11 4s2q:D 76 55 0.2593 0.1842 0.2545 0.005 4euw:A
12 7m5w:A 138 55 0.3333 0.1304 0.3273 0.007 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
13 4y60:C 76 56 0.2963 0.2105 0.2857 0.012
14 1gt0:D 79 52 0.2593 0.1772 0.2692 0.028 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
15 6hb4:A 197 41 0.1481 0.0406 0.1951 1.2 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
16 5kyn:A 730 39 0.2407 0.0178 0.3333 1.4 3efo:A, 3eg9:A, 3egd:A, 3egx:A, 8hr0:A, 5kyn:B, 5kyu:A, 5kyw:A, 5kyx:A, 5kyy:A, 2nup:A, 2nut:A, 5vne:A, 5vnf:A, 5vng:A, 5vnh:A, 5vni:A, 5vnj:A, 5vnk:A, 5vnl:A, 5vnm:A, 5vnn:A, 5vno:A
17 6zm7:CE 124 39 0.1852 0.0806 0.2564 1.8 8k2c:CE, 8xsy:CE, 6z6l:CE, 6zme:CE
18 4z0n:A 307 43 0.2963 0.0521 0.3721 4.4
19 5ys9:A 692 13 0.1296 0.0101 0.5385 6.0 5ys9:B
20 2fon:B 656 22 0.1481 0.0122 0.3636 8.4 2fon:A, 2fon:C
21 4isx:A 186 28 0.2037 0.0591 0.3929 8.9 4isx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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