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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYV
QIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCD

The query sequence (length=114) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5c8s:A 133 114 0.9825 0.8421 0.9825 4.82e-82 8a23:B, 7bq7:B, 8bsd:B, 8bzn:A, 8bzv:B, 8c0g:B, 7c2i:B, 7c2j:B, 8c5m:B, 5c8s:C, 5c8t:A, 5c8t:C, 5c8u:A, 5c8u:C, 7diy:A, 7egq:H, 7egq:U, 7eiz:H, 9emj:B, 9eml:B, 9emv:B, 9eun:B, 8f4s:B, 8f4y:B, 9fw2:A, 2fyg:A, 9fz4:A, 9fzk:A, 2g9t:A, 2g9t:B, 2g9t:C, 2g9t:D, 2g9t:E, 2g9t:F, 2g9t:G, 2g9t:H, 2g9t:I, 2g9t:J, 2g9t:K, 2g9t:L, 2g9t:M, 2g9t:N, 2g9t:O, 2g9t:P, 2g9t:Q, 2g9t:R, 2g9t:S, 2g9t:T, 2g9t:U, 2g9t:V, 2g9t:W, 2g9t:X, 2ga6:A, 2ga6:B, 2ga6:C, 2ga6:D, 2ga6:E, 2ga6:F, 2ga6:G, 2ga6:H, 2ga6:I, 2ga6:J, 2ga6:K, 2ga6:L, 2ga6:M, 2ga6:N, 2ga6:O, 2ga6:P, 2ga6:Q, 2ga6:R, 2ga6:S, 2ga6:T, 2ga6:U, 2ga6:V, 2ga6:W, 2ga6:X, 9gny:B, 9grp:B, 9grq:B, 7jhe:B, 7jib:B, 7jpe:B, 7jyy:B, 7jyy:D, 7jz0:B, 7jz0:D, 7koa:B, 7l6r:B, 7l6t:B, 7lw3:B, 7lw4:B, 7mc5:M, 7mc6:M, 7n0b:A, 7n0c:A, 7n0d:A, 7n0d:C, 7n0d:E, 7n0d:G, 5nfy:M, 5nfy:N, 5nfy:O, 5nfy:P, 7orr:A, 7oru:A, 7orv:A, 7orw:A, 8osx:B, 8ot0:B, 8oto:B, 8otr:B, 8ov1:B, 8ov2:B, 8ov3:B, 8ov4:B, 7r1t:B, 7r1u:B, 3r24:B, 8rv4:B, 8rv5:B, 8rv6:B, 8rv7:B, 8rv8:B, 8rv9:B, 8rva:B, 8rvb:B, 8rzc:B, 8rzd:B, 8rze:B, 8s8w:B, 8s8x:B, 8tyj:B, 7ult:B, 7ult:D, 6w4h:B, 6w61:B, 6w75:B, 6w75:D, 6wjt:B, 6wjt:D, 6wkq:B, 6wkq:D, 6wks:BBB, 6wq3:B, 6wrz:B, 6wvn:B, 6xkm:B, 2xyq:B, 2xyr:B, 2xyv:B, 6yz1:B, 6zct:A, 6zpe:A
2 5ynf:B 125 112 0.6053 0.5520 0.6161 3.63e-48 5yn5:B, 5yn6:B, 5yn8:B, 5ynb:B, 5yni:B, 5ynj:B, 5ynm:B, 5ynn:B, 5yno:B, 5ynp:B, 5ynq:B
3 7nh7:B 120 113 0.5351 0.5083 0.5398 6.68e-43
4 7o81:BK 39 33 0.2895 0.8462 1.0000 1.49e-18
5 7o80:BK 36 20 0.1754 0.5556 1.0000 9.90e-09 7o7y:BK, 7o7z:BK
6 3pak:A 145 100 0.2193 0.1724 0.2500 2.4 5ffr:A, 5ffs:A, 5fft:A, 3paq:A, 3par:A, 3pbf:A, 1r13:A, 1r14:A, 4wr9:A, 4wrc:A, 4wre:A, 4wrf:A, 4wuw:A, 4wux:A
7 9fa6:A 501 25 0.1053 0.0240 0.4800 3.3 8awk:AAA, 8awr:AAA, 8ax3:A, 8ax3:B, 9f9z:A, 9fa3:A, 9fad:A, 9fal:A, 9fay:A, 9faz:A, 9fb2:A, 9fdi:A, 3gxf:B, 3gxf:D, 5lvx:C, 5lvx:B, 5lvx:A, 5lvx:D, 6moz:A, 2nsx:A, 2nsx:B, 2nsx:C, 2nsx:D, 2nt0:A, 2nt0:B, 2nt0:C, 2nt0:D, 7nwv:AAA, 7nwv:BBB, 8p3e:B, 8p41:A, 8p41:B, 6q1n:A, 6q1n:B, 6q1p:A, 6q1p:B, 6q6k:A, 6q6k:B, 6q6l:A, 6q6l:B, 6q6n:A, 6q6n:B, 3rik:B, 3rik:D, 3ril:A, 3ril:B, 3ril:C, 3ril:D, 6t13:B, 6t13:C, 6t13:A, 6t13:D, 6tjq:BBB, 6tn1:AAA, 2v3d:A, 2v3d:B, 2v3e:A, 2v3e:B, 2vt0:A, 2vt0:B, 2wcg:A, 2wcg:B, 2xwd:A, 2xwd:B, 2xwe:A, 2xwe:B, 1y7v:A, 1y7v:B, 6ytp:AAA, 6ytp:BBB, 6ytr:AAA, 6ytr:BBB, 6yut:AAA, 6yut:BBB, 6yv3:AAA, 6yv3:BBB, 6z39:AAA, 6z39:BBB, 6z3i:BBB
8 6g0b:A 393 44 0.1228 0.0356 0.3182 4.2 6g09:A, 6g0n:A
9 5j5p:A 397 38 0.1053 0.0302 0.3158 5.2 5boc:A, 5bod:A, 4em7:A, 4emv:A, 5j5p:B, 5j5q:B, 5j5q:A, 5j5q:C, 5j5q:D, 4lp0:A, 4lpb:A, 4mb9:A, 4mbc:A, 4mot:A, 5yig:A, 5yig:B
10 4i3h:A 1037 38 0.1053 0.0116 0.3158 5.6 3foe:D, 3foe:C, 3fof:C, 3fof:D, 4i3h:B, 4juo:A, 4juo:C, 3k9f:A, 3k9f:C, 3k9f:D, 3k9f:B, 4koe:A, 4koe:C, 4koe:D, 4koe:B, 4kpe:A, 4kpe:C, 4kpe:D, 4kpe:B, 4kpf:A, 4kpf:C, 4kpf:D, 4kpf:B, 3ksa:A, 3ksa:C, 3ksa:D, 3ksa:B, 3ksb:A, 3ksb:B, 3ksb:C, 3ksb:D, 3ltn:A, 3ltn:C, 3ltn:D, 3ltn:B, 3rad:A, 3rad:C, 3rad:D, 3rad:B, 3rae:A, 3rae:C, 3rae:D, 3rae:B, 3raf:A, 3raf:C, 3raf:D, 3raf:B, 4z3o:B, 4z3o:A, 4z4q:A, 4z4q:B, 4z53:A, 4z53:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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