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BioLiP
>protein
AEVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNDLFDEDEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTY
KFYCAPHAGAGMVGKVTVN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1byo:A 99 99 1.0000 1.0000 1.0000 4.22e-69 1byo:B, 1byp:A
2 6yez:P 99 98 0.7879 0.7879 0.7959 1.45e-55 6zoo:P
3 1ag6:A 99 98 0.7879 0.7879 0.7959 5.00e-55 1oow:A, 2pcf:A, 1tef:A, 1tef:B, 1teg:A, 1teg:B, 1ylb:B
4 9pcy:A 99 98 0.7778 0.7778 0.7857 9.77e-54
5 4dp0:X 99 98 0.7172 0.7172 0.7245 2.95e-49 4dp1:X, 4dp2:X, 4dp4:X, 4dp5:X, 4dp6:X
6 1pla:A 97 99 0.7475 0.7629 0.7475 2.13e-48 1plb:A
7 1jxg:A 100 98 0.6869 0.6800 0.6939 4.09e-47 4dp7:X, 4dp8:X, 4dp9:X, 4dpa:X, 4dpb:X, 4dpc:X, 1jxg:B, 3pcy:A, 4pcy:A, 5pcy:A, 6pcy:A, 1plc:A, 1pnc:A, 1pnd:A, 1tkw:A
8 2plt:A 98 99 0.5859 0.5918 0.5859 1.99e-36 7zqe:M
9 1iuz:A 98 97 0.5657 0.5714 0.5773 4.90e-32
10 7pcy:A 98 99 0.5556 0.5612 0.5556 9.14e-32
11 1j5c:A 98 100 0.4646 0.4694 0.4600 5.71e-23 1j5d:A, 1jxd:A, 1jxf:A, 1pcs:A
12 4r0o:A 106 99 0.4040 0.3774 0.4040 4.53e-22 1baw:A, 1baw:B, 1baw:C, 3bqv:A, 3cvb:A, 3cvb:B, 3cvc:A, 3cvd:A, 3cvd:B, 3cvd:C, 2q5b:A, 2q5b:B, 2q5b:C, 4r0o:B, 4r0o:C, 4r0o:D, 2w88:A, 2w88:B, 2w88:C, 2w8c:A, 2w8c:B
13 2gim:A 106 100 0.4646 0.4340 0.4600 4.22e-20 2cj3:A, 2cj3:B, 1fa4:A, 2gim:C, 1nin:A, 1tu2:A
14 1b3i:A 97 97 0.4343 0.4433 0.4433 6.20e-20 2b3i:A, 2jxm:A
15 1bxu:A 91 97 0.3636 0.3956 0.3711 4.25e-19 1bxv:A
16 2bz7:A 102 105 0.3636 0.3529 0.3429 1.21e-14 2bzc:A, 1kdi:A, 1kdj:A
17 3tu6:A 127 99 0.3232 0.2520 0.3232 1.10e-08
18 6akn:A 124 98 0.3434 0.2742 0.3469 1.12e-08 6akn:B, 1bqk:A, 1bqr:A, 8hm9:A, 8hm9:B, 6ifp:A, 6ifp:C, 2jkw:A, 2jkw:B, 2ux6:A, 2ux7:A, 2uxf:A, 2uxg:A, 5wv4:A, 5wv4:B, 5xmo:A, 5y23:A, 5y23:B, 4yl4:A, 5ysg:A, 5ysg:B, 5ysg:C, 5ysg:D, 5yw3:A, 5yw3:B, 5yw3:C, 5yw3:D, 5z0x:A, 5z0x:B, 1zia:A, 1zib:A, 5ztd:A, 5ztd:B
19 3c75:A 106 87 0.2626 0.2453 0.2989 2.75e-06 3c75:B, 1id2:A, 1id2:B, 1id2:C
20 1aac:A 105 81 0.2727 0.2571 0.3333 1.55e-05 1aan:A, 1bxa:A, 2gb2:A, 2gba:A, 2gc4:C, 2gc4:G, 2gc4:K, 2gc4:O, 2idq:A, 2ids:A, 2idt:A, 2idu:A, 3ie9:A, 3iea:A, 2j55:A, 2j55:B, 2j56:A, 2j56:B, 2j57:A, 2j57:B, 2j57:C, 2j57:D, 3l45:A, 1mda:A, 1mda:B, 1mg2:C, 1mg2:G, 1mg2:K, 1mg2:O, 1mg3:C, 1mg3:G, 1mg3:K, 1mg3:O, 2mta:A, 2ov0:A, 4p5r:A, 4p5s:A, 3ply:A, 3ply:B, 3ply:C, 3ply:D, 2qdv:A, 2qdw:A, 2rac:A, 3rym:A, 3rym:C, 3rym:B, 3rym:D, 1sf3:A, 1sf5:A, 1sfd:A, 1sfd:B, 1sfh:A, 1sfh:B, 1t5k:A, 1t5k:B, 1t5k:C, 1t5k:D
21 1adw:A 123 89 0.2929 0.2358 0.3258 1.70e-05 1adw:B, 4bwt:A, 4bwt:B, 4bwu:A, 4bwu:B, 4bxv:A, 4bxv:B, 3erx:A, 3erx:B
22 5fc9:A 95 89 0.2727 0.2842 0.3034 1.18e-04 5fc9:B, 5fc9:C, 5fc9:D
23 8k9n:A 125 95 0.2525 0.2000 0.2632 1.25e-04 8k9p:A, 3nyk:A, 2p80:D, 1paz:A, 3paz:A, 4paz:A, 5paz:A, 6paz:A, 7paz:A, 8paz:A, 1py0:A, 1pza:A, 1pzb:A, 4rh4:A, 5x31:A, 5x31:B
24 1pmy:A 123 97 0.3131 0.2520 0.3196 1.27e-04
25 5b1j:C 124 87 0.2626 0.2097 0.2989 0.031 3ef4:A, 3ef4:B, 3ef4:C
26 6hbe:C 427 83 0.2525 0.0585 0.3012 0.043 6hbe:A, 6hbe:B
27 4hcf:B 96 40 0.1616 0.1667 0.4000 0.092 4hcf:A, 4hcg:A, 4hcg:B
28 7unf:P 468 30 0.1212 0.0256 0.4000 1.7 9b8p:D, 7khr:F, 7u8r:D, 7uzf:F, 7uzg:F, 6vq7:E, 6vq8:D, 6vqa:E, 6vqb:D, 6wlz:F, 6wm2:F, 6wm3:E
29 8hku:AL2P 234 54 0.1313 0.0556 0.2407 2.2 8hkv:AL2P, 8hky:AL2P, 8hkz:AL2P, 8hl1:AL2P, 8hl2:AL2P, 8hl3:AL2P, 8hl4:AL2P, 8hl5:AL2P
30 6o7b:B 254 66 0.2222 0.0866 0.3333 3.3 6o78:B
31 4ayb:B 1103 60 0.1919 0.0172 0.3167 3.6 3hkz:B, 3hkz:J, 2pmz:B, 2pmz:R, 4v8s:AR, 4v8s:BB, 2waq:B, 2wb1:B, 2wb1:R, 2y0s:B, 2y0s:R
32 2aan:A 123 39 0.1212 0.0976 0.3077 3.6
33 7tmm:B 464 30 0.1111 0.0237 0.3667 4.1 7tmo:B, 7tmp:B
34 3ufx:B 378 45 0.1616 0.0423 0.3556 4.5 3ufx:E, 3ufx:G, 3ufx:I
35 6zyz:A 259 45 0.1515 0.0579 0.3333 6.4 6zyz:B, 6zyz:C, 6zyz:D, 6zzt:C
36 3m49:A 665 36 0.1212 0.0180 0.3333 7.9 3hyl:A, 3hyl:B, 3m49:B
37 5yrf:B 142 29 0.1111 0.0775 0.3793 8.1 5yrf:A, 5yrg:A, 5yrg:B, 5yri:B, 5yri:A, 5yrj:A, 5yrj:B, 5yrl:A, 5yrl:B, 5yrm:B
38 8owm:C 413 28 0.1010 0.0242 0.3571 10.0 8owm:A, 8owm:B, 8owm:D, 8owm:E, 8owm:F, 8own:A, 8own:B, 8own:C, 8own:D, 8own:E, 8own:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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