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BioLiP
>protein
AERKFCSFCKHNGETEAVYTSHYLKNRDGDVMCPYLRQYKCPLCGATGAKAHTKRFCPMVDKNYCSV

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3alr:C 67 67 1.0000 1.0000 1.0000 6.78e-47 3alr:A, 3alr:B, 3alr:D
2 5kl1:B 70 55 0.4030 0.3857 0.4909 2.57e-16 5kl8:B
3 1kc7:A 872 27 0.1642 0.0126 0.4074 0.96
4 6zca:Y 1127 23 0.1642 0.0098 0.4783 1.3 6zfb:Y, 6zfb:y
5 8p5q:A 129 38 0.1791 0.0930 0.3158 1.4
6 5f3o:B 189 41 0.1791 0.0635 0.2927 1.8
7 6q63:A 751 52 0.2687 0.0240 0.3462 1.9 6q63:B, 6q63:C
8 1igy:B 434 21 0.1493 0.0230 0.4762 4.3 1igy:D
9 5wch:A 350 39 0.1791 0.0343 0.3077 4.5 5wch:B, 5wch:C, 5wch:D
10 5e1q:B 644 38 0.1791 0.0186 0.3158 6.2 3a24:A, 3a24:B, 5e1q:A
11 2aus:D 53 24 0.1493 0.1887 0.4167 7.3 2aus:B, 2ey4:E, 2ey4:F, 3hax:C, 3hay:C, 3hjw:B, 2hvy:C, 3lwo:B, 3lwp:B, 3lwq:B, 3lwr:B, 3lwv:B, 2rfk:B
12 1ffk:W 73 22 0.1343 0.1233 0.4091 7.3
13 5vcm:B 358 27 0.1343 0.0251 0.3333 9.7 5vcm:A, 5vcs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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