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BioLiP
>protein
AERAPEAPEGAGEVGLEQWLETSLERINREARLHFHPEFLFRLWNTCVEHWHDRHQRSLDYAKYRYLLLMHKAMYTHMQQ
GCPC

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5aja:B 84 84 1.0000 1.0000 1.0000 2.79e-60 4z8l:B, 4z8l:E
2 4cc9:B 98 84 0.4167 0.3571 0.4167 1.45e-18
3 8a8w:F 552 43 0.1786 0.0272 0.3488 0.064 8a8u:F, 8a8v:F
4 8a8w:D 577 32 0.1429 0.0208 0.3750 0.32 8a8u:B, 8a8u:C, 8a8u:D, 8a8u:E, 8a8u:A, 8a8v:B, 8a8v:C, 8a8v:D, 8a8v:E, 8a8v:A, 8a8w:A, 8a8w:B, 8a8w:C, 8a8w:E
5 3naz:C 613 47 0.1905 0.0261 0.3404 1.8 3naz:D, 3o3c:A, 3o3c:B, 3o3c:C, 3o3c:D, 3rsz:C, 3rsz:D, 3rsz:A, 3rsz:B
6 3krf:D 295 27 0.1548 0.0441 0.4815 3.0 3kra:A, 3kra:D, 3krc:A, 3krc:D, 3krf:A, 3kro:A, 3kro:D, 3krp:A, 3krp:D, 3oab:A, 3oab:D, 3oac:D
7 3si5:A 152 37 0.1548 0.0855 0.3514 4.0 3si5:B
8 6kz8:A 784 30 0.1310 0.0140 0.3667 4.0 6kz8:B, 6kz9:A
9 3ref:B 180 34 0.1548 0.0722 0.3824 5.4 4dvg:A, 3ref:A, 3reg:A, 3reg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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