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BioLiP
>protein
AEQVHLSGPTMGTTYNIKYIQQPGIADSKTLQTEIDRLLEEVNDQMSTYRKDSELSRFNQHTSSEPFAVSTQTLTVVKEA
IRLNGLTEGALDVTVGPLVNLWGFGPEARPDVVPTDEELNARRAITGIEHLTIEGNTLSKDIPELYVDLSTIAKGWGVDV
VADYLQSQGIENYMVEIGGEIRLKGLNRDGVPWRIAIEKPSVQEIIEPGDYAIATSGDYRNYFEQDGVRYSGIIDPTTGR
PINNRVVSVTVLDKSCMTADGLATGLMVMGEERGMAVAEANQIPVLMIVKTDDGFKEYASSSFKPFL

The query sequence (length=307) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6nxi:A 309 312 0.9837 0.9773 0.9679 0.0 6nxj:A, 6nxj:B
2 2o18:C 313 308 0.4463 0.4377 0.4448 3.90e-92 2o18:A, 2o18:B, 2o18:D, 4xgv:A, 4xgv:B, 4xgv:C, 4xgv:D, 4xgw:A, 4xgw:B, 4xgw:C, 4xgw:D, 4xgx:B
3 5mgy:H 316 301 0.4365 0.4241 0.4452 2.88e-91 5mgy:B, 5mgy:G, 5mgy:A, 5mgy:C, 5mgy:D, 5mgy:F
4 3pnd:C 323 319 0.4625 0.4396 0.4451 1.01e-88 3pnd:A, 3pnd:B, 3pnd:D
5 4xgx:A 290 308 0.3974 0.4207 0.3961 3.94e-70
6 4ifu:A 330 284 0.2671 0.2485 0.2887 1.37e-29 4ifw:A, 4ifx:A, 4ifz:A, 4ig1:A, 7mgt:A, 4xdr:A, 4xdt:A, 4xdu:A
7 7esa:A 322 241 0.2248 0.2143 0.2863 1.74e-29 7esb:A, 7esc:A, 7f2u:A, 7f2u:B
8 7x7i:A 583 77 0.0749 0.0395 0.2987 1.6 7x7i:B, 7x7j:A, 7x7j:B, 7x7k:A, 7x7k:B
9 2btq:A 436 35 0.0423 0.0298 0.3714 2.1 2bto:A, 2bto:B, 5o09:1A, 5o09:2A, 5o09:3A, 5o09:4A, 5o09:5A, 5o09:6A, 5o09:7A, 5o09:8A, 7quq:A, 7quq:C, 7quq:E
10 4x2v:A 174 35 0.0391 0.0690 0.3429 2.4 4x2v:D
11 2bhz:A 589 97 0.0814 0.0424 0.2577 2.4 2bhy:A, 2bxy:A, 2bxz:A, 2by0:A, 2by1:A, 2by2:A, 2by3:A
12 5n80:A 358 123 0.0847 0.0726 0.2114 4.1 6y6i:A
13 2aa1:B 146 72 0.0619 0.1301 0.2639 4.8 2aa1:D
14 7die:A 164 75 0.0586 0.1098 0.2400 4.8 7die:B, 7die:C, 7die:D, 7die:E, 7die:F
15 6skz:A 2638 50 0.0586 0.0068 0.3600 6.1 6sl0:A, 6sl0:B
16 6sl1:A 2652 50 0.0586 0.0068 0.3600 6.2 6sky:A, 6sky:B
17 6yw5:EE 367 90 0.0684 0.0572 0.2333 8.2 6ywe:EE, 6ywx:EE, 6ywy:EE

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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