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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AENVTGLFKDCSKIITGLHPTQAPTHLSVDIKFKTEGLCVDIPGIPKDMTYRRLISMMGFKMNYQVNGYPNMFITREEAI
RHVRAWIGFDVEGCHATRDAVGTNLPLQLGFSTGVNLVAVPTGYVDTENNTEFTRVNAKPPPGDQFKHLIPLMYKGLPWN
VVRIKIVQMLSDTLKGLSDRVVFVLWAHGFELTSMKYFVKIGPERTCCLCDKRATCFSTSSDTYACWNHSVGFDYVYNPF
MIDVQQWGFTGNLQSNHDQHCQVHGNAHVASCDAIMTRCLAVHECFVKRVDWSVEYPIIGDELRVNSACRKVQHMVVKSA
LLADKFPVLHDIGNPKAIKCVPQAEVEWKFYDAQPCSDKAYKIEELFYSYATHHDKFTDGVCLFWNCNVDRYPANAIVCR
FDTRVLSNLNLPGCDGGSLYVNKHAFHTPAFDKSAFTNLKQLPFFYYSDSPCEYVPLKSATCITRCNLGGAVCRHHANEY
RQYLDAYNMMISAGFSLWIYKQFDTYNLWNTFTR

The query sequence (length=514) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7egq:X 524 524 0.9475 0.9294 0.9294 0.0 5c8s:B, 5c8s:D, 5c8t:B, 5c8t:D, 5c8u:B, 5c8u:D, 7diy:B, 7egq:K, 7eiz:K, 9fw2:B, 9fz4:B, 9fzk:B, 7mc5:A, 7mc6:A, 7n0b:B, 7n0c:B, 7n0d:B, 7n0d:D, 7n0d:F, 7n0d:H, 5nfy:A, 5nfy:B, 5nfy:C, 5nfy:D
2 5slp:D 465 501 0.8444 0.9333 0.8663 0.0 7qgi:D, 7qif:D, 7r2v:A, 5skw:D, 5skx:D, 5sky:D, 5skz:D, 5sl0:D, 5sl1:D, 5sl2:D, 5sl3:D, 5sl4:D, 5sl5:D, 5sl6:D, 5sl7:D, 5sl8:D, 5sl9:D, 5sla:D, 5slb:D, 5slc:D, 5sld:D, 5sle:D, 5slf:D, 5slg:D, 5slh:D, 5sli:D, 5slj:D, 5slk:D, 5sll:D, 5slm:D, 5sln:D, 5slo:D, 5slq:D, 5slr:D, 5sls:D, 5slt:D, 5slu:D, 5slv:D, 5slw:D, 5slx:D, 5sly:D, 5slz:D, 5sm0:D, 5sm1:D, 5sm2:D, 5sm3:D, 5sm4:D, 5sm5:D, 5sm6:D, 5sm7:D, 5sm8:D, 5sm9:D, 5sma:D, 5smb:D, 5smc:D, 5smd:D, 5sme:D, 5smf:D, 5smg:D, 5smh:D, 5smi:D, 5smk:D
3 7r2v:B 439 489 0.8113 0.9499 0.8528 0.0
4 9feh:A 264 223 0.3385 0.6591 0.7803 2.23e-121 8bwu:A, 8e1f:D, 8frj:A, 8frk:A, 2qb0:C, 7tw7:A, 7tw8:A, 7tw9:A
5 6ven:O 315 140 0.0700 0.1143 0.2571 0.73
6 2j68:A 680 46 0.0331 0.0250 0.3696 0.87 2w6d:A, 2w6d:B
7 3svl:B 182 115 0.0525 0.1484 0.2348 1.4 3svl:A
8 4r42:C 220 43 0.0272 0.0636 0.3256 5.0 6j42:A, 6j42:B, 6j42:C, 4r42:A, 4r42:B
9 7twc:A 416 93 0.0409 0.0505 0.2258 6.8 7twe:A, 7twe:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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