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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AELTCTDVSGLTAEEIQMRESLQYTDHSPYPDKTCANCQLYVPAESPDQCGGCQLIKGPIHPNGYCTSWVQKAT

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3h31:A 74 74 1.0000 1.0000 1.0000 5.62e-52
2 1isu:A 62 57 0.2973 0.3548 0.3860 1.71e-08 1isu:B
3 1hpi:A 71 63 0.2838 0.2958 0.3333 2.54e-05
4 3hip:A 82 46 0.2297 0.2073 0.3696 0.001 3hip:B, 3hip:C
5 7a4l:A 54 46 0.2027 0.2778 0.3261 0.24 7a58:A, 6xyv:A
6 2csz:A 76 44 0.2027 0.1974 0.3409 0.72
7 1hlq:A 75 78 0.2973 0.2933 0.2821 1.0 1hlq:B, 1hlq:C
8 8wmc:A 1249 29 0.1351 0.0080 0.3448 2.3
9 8eex:A 1284 29 0.1351 0.0078 0.3448 2.3
10 7y9x:A 1458 29 0.1351 0.0069 0.3448 2.4 8gs2:A
11 7y9y:A 1482 29 0.1351 0.0067 0.3448 2.4 8wml:A
12 8eey:A 1544 29 0.1351 0.0065 0.3448 2.4 7yna:A, 7ynb:A, 7ync:A
13 8d1v:A 1229 29 0.1351 0.0081 0.3448 2.5
14 8wmi:A 1237 29 0.1351 0.0081 0.3448 2.5
15 7wah:A 1473 29 0.1351 0.0068 0.3448 2.5
16 7ynd:A 1567 29 0.1351 0.0064 0.3448 2.5
17 7yn9:A 1514 29 0.1351 0.0066 0.3448 2.6
18 8wm4:A 1331 29 0.1351 0.0075 0.3448 2.6
19 6j0x:B 466 37 0.1216 0.0193 0.2432 2.8 6j0w:A, 6j0w:B, 6j0x:A, 6j0x:C, 6j0x:D
20 7jgr:A 401 51 0.1892 0.0349 0.2745 4.8 7jgs:A, 7jk2:A, 7jk3:A, 7jk4:A, 7jk5:A, 7jk6:A
21 7bok:A 309 35 0.1486 0.0356 0.3143 5.0 7bok:B, 7bok:C, 7bok:D, 7bok:E, 7bok:F
22 8qec:A 1101 31 0.1622 0.0109 0.3871 6.1 9f40:A, 9f40:D, 9f40:B, 9f40:C, 9f41:C, 9f41:D, 9f41:A, 9f41:B, 8qeb:A, 8qed:A, 8qee:A, 6r4l:A
23 1lwh:A 441 15 0.1081 0.0181 0.5333 9.2 1lwh:B, 1lwj:A, 1lwj:B
24 7ozs:F 571 15 0.1216 0.0158 0.6000 9.4 5aff:A, 4gmn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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