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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AEIYNKDGNKLDLYGKVDGLHYFSDDDSQDGDQTYMRLGFKGETQVNDQLTGYGQWEYQIQGNSGENENNSWTRVAFAGL
KFGDAGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNSDFFGLVDGLNFAVQYQGKNGSASGED
QTNNGRTELRQNGDGVGGSITYNLGEGFGIGTAVSSSKRTSSQNDLTYGNGDRAETYTGGLKYDANNIYLAAQYTQTYNA
TRVGNLGWANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDLENGYGDQDLLKYVDVGATYYFNKNMSTYVDYKINLLDDK
EFTRNAGISTDDIVALGLVYQF

The query sequence (length=342) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5fvn:A 342 342 1.0000 1.0000 1.0000 0.0 5fvn:B, 5fvn:C, 5fvn:D, 5fvn:E, 5fvn:F
2 2j1n:A 346 347 0.8830 0.8728 0.8703 0.0 8i8r:A, 8i8r:C, 8i8r:B, 8i8x:A, 8i8x:C, 8i8x:B, 2j1n:B, 2j1n:C
3 2xe5:B 343 344 0.8655 0.8630 0.8605 0.0 2xe5:D
4 8pyz:F 347 346 0.8275 0.8156 0.8179 0.0 5nup:A, 5nup:B, 5nup:C, 5o79:C, 5o79:A, 5o79:B, 8pyz:E, 8pyz:C, 7q3t:A, 7q3t:B, 7q3t:C, 7q3t:E, 7q3t:D, 7q3t:F, 6rck:C, 6rd3:A, 6rd3:B, 6rd3:C, 6rd3:D, 6rd3:E, 6rd3:F, 7szi:C
5 5o9c:A 348 349 0.7953 0.7816 0.7794 0.0 5o9c:D, 5o9c:B
6 6ene:A 329 346 0.6520 0.6778 0.6445 6.42e-142 6ene:C, 6ene:B
7 6zhp:B 341 355 0.6287 0.6305 0.6056 6.03e-132 7fdy:A, 7fdy:B, 7fdy:C, 7ff7:A, 7ff7:B, 7ff7:C, 3fyx:A, 4gcp:A, 4gcp:B, 4gcq:A, 4gcq:B, 4gcs:A, 1gfm:A, 1gfn:A, 1gfo:A, 1gfp:A, 1gfq:A, 4lse:A, 4lse:B, 4lse:C, 4lsi:A, 4lsi:B, 4lsi:C, 1mpf:A, 5nuo:C, 5nuo:A, 5nuo:E, 5nuq:A, 5nuq:B, 5nuq:D, 5nuq:F, 5nur:E, 5nur:C, 5nur:A, 3o0e:A, 3o0e:F, 3o0e:C, 3o0e:D, 3o0e:E, 3o0e:B, 2omf:A, 2zfg:A, 6zhv:B, 6zhv:A, 6zhv:C, 2zld:A, 2zld:B
8 4kr8:C 340 352 0.5760 0.5794 0.5597 2.19e-123 4kr4:C, 4kra:C
9 5nxu:A 352 357 0.5789 0.5625 0.5546 2.36e-123 5nxu:B, 5nxu:C
10 5o77:A 337 348 0.5614 0.5697 0.5517 2.48e-122
11 6ehb:C 320 347 0.2602 0.2781 0.2565 1.08e-13 6ehb:B, 6ehc:A, 6ehc:B, 5onu:A, 5onu:B, 5onu:C
12 8ip2:A 478 140 0.0965 0.0690 0.2357 5.0
13 6ifh:A 119 42 0.0439 0.1261 0.3571 5.3
14 6btl:A 492 92 0.0702 0.0488 0.2609 5.6 6btl:B, 6bu7:A, 6bu7:B, 4nev:A, 4nev:B, 7nvp:AAA, 7nvp:BBB, 6oex:B, 6oex:A, 6oey:B, 6oey:A, 6oez:B, 6oez:A, 8pf3:A, 8pf3:B, 8pf3:C, 8pf3:D, 8pf4:A, 8pf4:B, 8pf4:C, 8pf4:D, 8pf5:A, 8pf5:B, 8pf5:C, 8pf5:D, 6rb5:A, 6rb5:B, 5s9s:A, 5s9s:B, 5s9t:A, 5s9t:B, 5s9u:A, 5s9u:B, 5s9v:A, 5s9v:B, 5s9w:A, 5s9w:B, 5s9x:A, 5s9x:B, 5s9y:A, 5s9y:B, 5s9z:A, 5s9z:B, 5sa0:A, 5sa0:B, 5sa1:A, 5sa1:B, 5sa2:A, 5sa2:B, 5sa3:A, 5sa3:B, 5smj:A, 5smj:B, 2wba:A, 2wba:B, 2woi:A, 2woi:B, 2woi:C, 2woi:D, 2wov:A, 2wov:B, 2wov:C, 2wov:D, 2wow:A, 2wow:B, 2wow:C, 2wow:D, 2wp5:A, 2wp5:B, 2wp5:C, 2wp5:D, 2wp6:A, 2wp6:B, 2wp6:C, 2wp6:D, 2wpc:A, 2wpc:B, 2wpc:C, 2wpc:D, 2wpe:A, 2wpe:B, 2wpe:C, 2wpe:D, 2wpf:A, 2wpf:B, 2wpf:C, 2wpf:D
15 6ehd:A 322 101 0.0789 0.0839 0.2673 7.0 6ehe:A, 6ehf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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