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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AEIVTALPVPLAVAQPAPFYLTADMFGGLPVQLAGGELSKLVGKPVAAPHVHEVDELYFLVSPEPGQARIEVHLDGVRHE
LVSPAVMRIPAGSEHCFLTLEATVGSYCFGILVG

The query sequence (length=114) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7eqk:A 119 117 1.0000 0.9580 0.9744 7.83e-76 7eqk:B, 7eu6:A, 7eu6:B, 7eue:A, 7eue:B, 7eup:A, 7eup:B, 7euz:A, 7euz:B, 7f6x:A, 7f6x:B
2 6j4b:A 123 116 0.8596 0.7967 0.8448 9.83e-64 6j4c:A, 6jtf:A
3 4uob:A 242 33 0.1140 0.0537 0.3939 0.35 8a5g:A
4 2h0v:A 335 67 0.2105 0.0716 0.3582 0.58 2h0v:B, 8hfb:A, 8hfb:B, 1y3t:A, 1y3t:B
5 7vlx:Y 247 77 0.2018 0.0931 0.2987 0.63 7vlx:A, 7vlx:C, 7vly:Y, 7vly:C, 7vly:F
6 6m32:A 628 87 0.2105 0.0382 0.2759 1.3 6m32:a
7 2exh:A 533 60 0.1491 0.0319 0.2833 1.5 2exh:B, 2exh:C, 2exh:D, 2exi:A, 2exi:B, 2exi:C, 2exi:D, 2exj:A, 2exj:B, 2exj:C, 2exj:D, 2exk:A, 2exk:B, 2exk:C, 2exk:D
8 5im3:A 874 95 0.2193 0.0286 0.2632 1.6 5im3:B
9 2wjs:A 519 45 0.1316 0.0289 0.3333 2.3
10 2fl5:L 209 39 0.1404 0.0766 0.4103 2.4 2fl5:A
11 4m55:E 164 31 0.1140 0.0793 0.4194 2.9
12 8pol:B 479 25 0.0965 0.0230 0.4400 3.3 4lvn:A, 4lvo:A, 8pol:A
13 4umk:D 176 66 0.1842 0.1193 0.3182 3.4 4umk:A
14 5zqx:A 536 52 0.1316 0.0280 0.2885 3.7 5zqs:A, 5zqs:B, 5zqx:B, 5zqx:C, 5zqx:D
15 6rxx:UV 1061 34 0.1053 0.0113 0.3529 8.4
16 7t7n:B 440 18 0.0877 0.0227 0.5556 9.3 8tkz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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