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BioLiP
>protein
AEIKHYQFNVVMTCSGCSGAVNKVLTVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGKQL

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1fd8:A 73 72 1.0000 0.9178 0.9306 3.40e-42 3k7r:A, 3k7r:B, 3k7r:C, 3k7r:D, 3k7r:E, 3k7r:F, 3k7r:G, 3k7r:H, 3k7r:I, 3k7r:J, 3k7r:K, 3k7r:L, 5vde:B, 5vde:D, 5vdf:A, 5vdf:C, 5vdf:E, 5vdf:G, 5vdf:H
2 5t7l:A 68 59 0.3582 0.3529 0.4068 2.25e-06 1fee:A, 3iwl:A, 3iwx:A, 3iwx:B, 4qot:A, 4qot:B, 1tl4:A, 4ydx:A, 7zc3:A
3 6fon:A 252 58 0.2985 0.0794 0.3448 0.003 1do5:A, 1do5:B, 1do5:C, 1do5:D, 6fn8:A, 6fn8:B, 6fol:A, 6fol:D, 6fol:E, 6fol:H, 6fon:C, 6fp6:B, 6fp6:D, 6fp6:F, 6fp6:H, 6fp6:J, 6fp6:L, 6fp6:N, 6fp6:P, 6fp6:R, 6fp6:T, 6fp6:V, 6fp6:X, 2rsq:A
4 4y2i:A 65 61 0.3134 0.3231 0.3443 0.013
5 6dtd:A 1053 24 0.1493 0.0095 0.4167 0.28
6 1afj:A 72 30 0.1940 0.1806 0.4333 0.34
7 5tip:A 436 46 0.1940 0.0298 0.2826 0.60 5tip:B, 5tip:C, 5tip:D, 5tiq:A, 5tiq:B
8 3lgx:A 508 46 0.2537 0.0335 0.3696 0.87 3lgx:B, 3lgx:C, 3lgx:D
9 8eew:A 766 40 0.2537 0.0222 0.4250 1.6 8eew:B, 8eff:A, 8eff:B, 8eff:C, 8eff:D, 8efr:A, 8efr:B, 8efr:C, 8efr:K, 8efr:D, 8efr:L, 8efr:E, 8efr:M, 8efr:F, 8efr:N, 8efr:G, 8efr:O, 8efr:H, 8efr:P, 8efr:I, 8efr:Q, 8efr:J, 8efr:R, 6jtg:A
10 1r4w:A 221 26 0.1791 0.0543 0.4615 2.5 1r4w:B, 1r4w:C, 1r4w:D
11 1fvs:A 72 27 0.1940 0.1806 0.4815 2.6 2ggp:B
12 6qun:O 334 70 0.3134 0.0629 0.3000 2.7 6qun:R, 6quq:O, 6quq:R, 4z0h:O, 4z0h:R
13 1z08:C 167 57 0.2836 0.1138 0.3333 3.9 1yzt:A, 1yzt:B, 1yzu:A, 1yzu:B, 1z08:A, 1z08:B, 1z08:D, 1z0i:A
14 4bmk:A 398 41 0.1940 0.0327 0.3171 5.9 4bmk:B, 2jg2:A, 2w8j:A, 2w8t:A, 2w8u:A, 2w8v:A, 2w8w:A, 2xbn:A
15 3e5r:O 336 64 0.2537 0.0506 0.2656 7.8 3e5r:A, 3e5r:B, 3e5r:C, 3v1y:O, 3v1y:A, 3v1y:B, 3v1y:C
16 1qs0:B 338 45 0.1940 0.0385 0.2889 8.5
17 7c8j:A 707 20 0.1343 0.0127 0.4500 9.9 7c8k:A, 8k4u:B, 8u0t:A, 7xa7:A, 7xa7:C, 7xa7:E, 7xa7:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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