Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AEFRLRPEISVAQTDYGMVLLDGRSGEYWQLNDTAALIVQRLLDGHSPADVAQFLTSEYEVERTDAERDIAALVTSLKEN
GMALP

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6jx3:B 85 85 1.0000 1.0000 1.0000 6.95e-59
2 5v1v:A 88 75 0.2353 0.2273 0.2667 2.44e-04 5v1u:A, 5v1u:B, 5v1u:C, 5v1u:D, 5v1v:B
3 6l55:C 170 52 0.2118 0.1059 0.3462 0.006 6kzy:A, 6kzy:B, 6kzy:C, 6kzy:D, 6l55:A, 6l55:B, 6l55:D, 6l55:E, 6l55:F, 6l55:G, 6l55:H, 6l55:I, 6l55:J, 6l55:K, 6l55:L, 6l56:A, 6l56:B, 6l56:C, 6l56:D, 6l56:E, 6l56:F, 6l56:G, 6l56:H, 6l56:I, 6l56:J, 6l56:K, 6l56:L, 6l56:M, 6l56:N, 6l56:O, 6l56:P, 6l56:Q, 6l56:R, 6l56:S, 6l56:T, 6l56:U, 6l56:V, 6l56:W, 6l56:X, 6l58:A, 6l58:C, 6l58:B, 6l58:D
4 6lp5:A 170 52 0.1765 0.0882 0.2885 0.044 6lp5:B, 6lp5:C, 6lp5:D, 6lp5:E, 6lp5:F
5 5xm3:A 596 43 0.2118 0.0302 0.4186 0.28 5xm3:C
6 5xxu:U 103 20 0.1294 0.1068 0.5500 0.49
7 6yw5:GG 223 49 0.1882 0.0717 0.3265 0.72 6ywe:GG, 6ywx:GG, 6ywy:GG
8 1sw1:A 270 66 0.2235 0.0704 0.2879 0.92 1sw1:B, 1sw4:A, 1sw4:B
9 8u87:A 621 44 0.1765 0.0242 0.3409 1.6 8u7y:A, 8u7y:B, 8u85:A, 8u85:C, 8u86:A, 8u86:C, 8u87:C
10 8dgf:A 1541 63 0.2118 0.0117 0.2857 1.9 8dgf:B, 8dgf:C, 8dgf:D
11 2npn:A 238 29 0.1412 0.0504 0.4138 2.2
12 6zj3:SM 101 20 0.1176 0.0990 0.5000 2.9
13 2y8w:A 215 59 0.2235 0.0884 0.3220 3.2 3qrp:A, 3qrq:A, 3qrr:A, 2y8y:A, 2y9h:A, 2y9h:C, 2y9h:E, 2y9h:G, 2y9h:I
14 5olp:A 432 46 0.1882 0.0370 0.3478 3.5 5olp:B
15 5c37:A 632 36 0.1529 0.0206 0.3611 3.9 5c37:C, 6nna:A, 6nna:B, 4piv:A, 4piv:B
16 5via:A 278 72 0.2235 0.0683 0.2639 4.0
17 4crm:P 608 29 0.1294 0.0181 0.3793 4.1 7a1g:x, 8cah:x, 3j16:B
18 7a01:I3 104 20 0.1059 0.0865 0.4500 4.6 7a09:h, 5a2q:U, 5aj0:BU, 9bdl:AS20, 9bdn:AS20, 9bdp:AS20, 8bhf:V3, 9bkd:h, 9bln:h, 8btk:At, 7cpu:SU, 7cpv:SU, 4d5l:U, 4d61:U, 6d90:VV, 6d9j:VV, 9f1b:At, 9f1c:At, 9f1d:At, 6fec:h, 5flx:U, 6g51:U, 6g53:U, 6g5h:U, 6g5i:U, 8g5y:SU, 8g5z:SU, 8g60:SU, 8g61:SU, 8g6j:SU, 8glp:SU, 6gz3:BU, 6gz4:BU, 6gz5:BU, 6hcf:V1, 6hcj:V2, 6hcm:V1, 6hcq:V2, 8ifd:21, 8ife:21, 6ip5:21, 6ip6:21, 6ip8:21, 3j7p:SU, 3j7r:SU, 3jag:UU, 3jah:UU, 3jai:UU, 3jaj:SU, 3jan:SU, 8jdj:AG, 8jdk:AG, 8jdl:AG, 8jdm:AG, 7jqb:V, 7jqc:V, 5k0y:h, 8k2c:SU, 7k5i:U, 4kzx:U, 4kzy:U, 4kzz:U, 5lks:SU, 7ls1:C3, 7ls2:C3, 5lzs:UU, 5lzt:UU, 5lzu:UU, 5lzv:UU, 5lzw:UU, 5lzx:UU, 5lzy:UU, 5lzz:UU, 7mdz:UU, 6mtb:UU, 6mtc:UU, 6mtd:UU, 6mte:UU, 7nwg:V2, 7nwh:UU, 7nwi:UU, 7o7y:At, 7o7z:At, 7o80:At, 7o81:At, 5oa3:U, 6ole:SU, 6olf:SU, 6olg:BU, 6oli:SU, 6olz:BU, 6om0:SU, 6om7:SU, 7oya:U2, 7oyb:U2, 7oyd:UU, 8oz0:w, 8p03:W, 8p09:W, 8p2k:At, 6p4g:V, 6p4h:V, 6p5i:V, 6p5j:V, 6p5k:V, 6p5n:V, 8pj1:h, 8pj2:h, 8pj3:h, 8pj4:h, 8pj5:h, 8pj6:h, 8ppk:U, 8ppl:AU, 8q7z:At, 8q87:At, 7qgg:SU, 8qoi:SU, 7qp6:h, 7qp7:h, 7qvp:SU, 7qvp:RU, 6qzp:SU, 7r4x:U, 6r5q:GG, 6r6g:GG, 6r6p:GG, 6r7q:GG, 8scb:UU, 6sgc:V1, 7syg:V, 7syh:V, 7syi:V, 7syj:V, 7syk:V, 7syl:V, 7sym:V, 7syn:V, 7syo:V, 7syp:V, 7syq:V, 7syr:V, 7sys:V, 7syt:V, 7syu:V, 7syv:V, 7syw:V, 7syx:V, 5t2c:AB, 8t4s:U, 7toq:AS20, 7tor:AS20, 7tql:V, 7ucj:UU, 7uck:UU, 4ug0:SU, 4ujc:CU, 4ujd:CU, 4uje:BU, 4v6x:AU, 5vyc:U1, 5vyc:U2, 5vyc:U3, 5vyc:U4, 5vyc:U5, 5vyc:U6, 6w2s:V, 6w2t:V, 6xa1:SU, 7xnx:SU, 7xny:SU, 8xsx:SU, 8xsy:SU, 8xsz:SU, 8xxl:SU, 8xxm:SU, 8xxn:SU, 6y0g:SU, 8y0w:SU, 8y0x:SU, 6y2l:SU, 6y57:SU, 6yal:W, 6yam:W, 6yan:W, 6ybs:h, 8yoo:SU, 8yop:SU, 6z6l:SU, 6z6m:SU, 6z6n:SU, 7zjw:Sf, 7zjx:Sf, 6zlw:V, 6zm7:SU, 6zme:SU, 6zmi:SU, 6zmo:SU, 6zmt:V, 6zmw:h, 6zn5:V, 6zoj:U, 6zol:U, 6zon:h, 6zp4:h, 6zuo:U, 6zv6:U, 6zvh:U, 6zvj:h, 6zvk:I3, 6zxd:U, 6zxe:U, 6zxf:U, 6zxg:U, 6zxh:U
19 8eyi:F 1211 28 0.1294 0.0091 0.3929 5.8 4w9n:A, 4w9n:B, 4w9n:C, 4w9n:D
20 7vt2:A 169 52 0.1765 0.0888 0.2885 5.8 7vt2:S, 7vt2:I, 7vt2:O, 7vt2:V, 7vt2:C, 7vt2:Q, 7vt2:U, 7vt2:a, 7vt2:c, 7vt2:d, 7vt2:e, 7vt2:f, 7vt2:g, 7vt2:i, 7vt2:j, 7vt2:k, 7vt2:l, 7vt2:m, 7vt2:o, 7vt2:q, 7vt2:w, 7vt2:s, 7vt2:v, 7vt2:B, 7vt2:D, 7vt2:E, 7vt2:F, 7vt2:H, 7vt2:J, 7vt2:K, 7vt2:L, 7vt2:M, 7vt2:N, 7vt2:P, 7vt2:R, 7vt2:T, 7vt2:W, 7vt2:X, 7vt2:Z, 7vt2:b, 7vt2:h, 7vt2:n, 7vt2:p, 7vt2:r, 7vt2:t, 7vt2:u, 7vt2:x, 8w91:b, 8w93:b, 8w94:b, 8w95:b
21 4v6w:AU 102 20 0.0941 0.0784 0.4000 6.7 6xu6:AU, 6xu7:AU, 6xu8:AU
22 7dcp:x 670 20 0.1059 0.0134 0.4500 9.2 7dco:x, 7dd3:x
23 2d0v:A 597 46 0.2000 0.0285 0.3696 9.2 2d0v:D, 2d0v:I
24 3ppe:A 203 37 0.1412 0.0591 0.3243 9.6 3ppe:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218