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BioLiP
>protein
AEETCFDKYTGNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTIANRCHEGGQSYKIGDTWRRPHYMLECVCLGNGKGE
WTCKPI

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2rkz:C 90 90 1.0000 0.9556 0.9556 7.56e-59 3cal:A, 3cal:C, 4pz5:A, 2rkz:A, 2rkz:B, 2rkz:D, 2rkz:E, 2rkz:F, 3zrz:A, 3zrz:B
2 1o9a:A 93 48 0.5581 0.5161 1.0000 1.65e-29
3 1o9a:A 93 87 0.3140 0.2903 0.3103 7.19e-06
4 2rky:C 92 88 0.5000 0.4674 0.4886 6.58e-23 2rky:A, 2rl0:A, 2rl0:B, 2rl0:D, 2rl0:F, 2rl0:K
5 2rl0:I 79 85 0.4884 0.5316 0.4941 3.10e-21
6 3ejh:A 91 79 0.3605 0.3407 0.3924 4.52e-13 3ejh:B, 3gxe:B, 3gxe:A
7 3ejh:A 91 41 0.1628 0.1538 0.3415 0.037 3ejh:B, 3gxe:B, 3gxe:A
8 3m7p:A 301 84 0.3023 0.0864 0.3095 2.51e-06
9 3m7p:A 301 79 0.3140 0.0897 0.3418 2.56e-06
10 3m7p:A 301 41 0.1628 0.0465 0.3415 0.093
11 5bz4:K 400 46 0.1744 0.0375 0.3261 0.45 5bz4:B, 5bz4:D, 5bz4:F, 5bz4:H
12 7elh:B 1264 54 0.1744 0.0119 0.2778 0.84 1mwh:A, 1n1h:A, 1n35:A, 1n38:A, 1uon:A, 7yed:R, 7yfe:R
13 6g9f:A 539 25 0.1047 0.0167 0.3600 2.4 6g9s:A
14 3om2:A 448 41 0.1977 0.0379 0.4146 2.8 3om4:A, 3om4:B, 3om4:C, 3om4:D, 3om5:A, 3om5:B, 3om5:C, 3om5:D, 3om6:A, 3om6:B, 3om6:C, 3om6:D, 3om7:C, 3om7:A, 3om7:B, 3om7:D
15 6tix:BBB 533 24 0.1047 0.0169 0.3750 3.3 6tix:AAA
16 4bed:A 1664 23 0.1047 0.0054 0.3913 5.2 4bed:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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