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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVL
DHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPVVSRELQALEARIRQKDEEDKARFR

The query sequence (length=154) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4apo:B 154 154 1.0000 1.0000 1.0000 2.82e-112 4aif:A, 4aif:B, 4apo:A
2 1qz2:A 285 146 0.2792 0.1509 0.2945 4.29e-10 1qz2:B
3 5njx:A 413 128 0.2078 0.0775 0.2500 5.12e-07 7a6w:AAA, 7a6w:BBB, 7a6x:AAA, 7aot:A, 7aou:A, 7apq:A, 7aps:A, 7aps:B, 7apt:A, 7apw:A, 7awf:A, 7awx:A, 7awx:B, 7b9y:A, 7b9z:A, 7ba0:A, 8ba6:A, 8baj:A, 5bxj:A, 8cca:A, 8ccb:A, 8ccc:A, 8ccd:A, 8cce:A, 8ccf:A, 8ccg:A, 8cch:A, 8chn:A, 8chp:A, 8chq:A, 8chr:A, 5dit:A, 5diu:A, 5div:A, 4drh:A, 4drh:D, 4dri:A, 4drk:A, 4drk:B, 4drm:A, 4drn:A, 4dro:A, 4drp:A, 4drq:A, 7ett:A, 7etu:A, 7etv:A, 9eu6:A, 9eu7:A, 9eu7:B, 9eu8:A, 9eu8:B, 9eu9:A, 9eu9:B, 9eua:A, 9eua:B, 9eub:A, 9eub:B, 9euc:A, 9euc:B, 9eud:A, 9eud:B, 9eue:A, 9eue:B, 9ey3:A, 9ey4:A, 4jfi:A, 4jfj:A, 4jfk:A, 4jfl:A, 4jfm:A, 3o5f:A, 3o5r:A, 5obk:A, 8pc2:G, 8pc2:H, 8pj8:A, 8pja:A, 7r0l:A, 8r5k:A, 6saf:A, 4tw6:A, 4tw7:A, 4tx0:A, 6tx4:A, 6tx5:A, 6tx6:A, 6tx7:A, 6tx9:A, 6txx:A, 4w9o:A, 4w9o:E, 4w9p:A, 4w9p:E, 4w9q:A
4 5mgx:G 266 112 0.2208 0.1278 0.3036 0.001 5mgx:F, 5mgx:E, 5mgx:H
5 6fdp:A 120 118 0.2013 0.2583 0.2627 0.005 4cgw:B, 6fdt:A
6 4cgv:C 126 116 0.1883 0.2302 0.2500 0.005 4cgv:D, 4cgv:A, 4cgv:B
7 4cgw:A 115 111 0.1948 0.2609 0.2703 0.007
8 3kd7:A 102 73 0.1299 0.1961 0.2740 0.014 3kd7:B, 3kd7:C, 3kd7:D, 3kd7:E
9 6hft:A 312 153 0.2532 0.1250 0.2549 0.023
10 6hpg:A 121 33 0.1039 0.1322 0.4848 0.026 6hpg:B, 6hpg:C, 6hpg:D, 6hpg:E, 6hpg:F, 6q3q:A, 6q3q:B
11 7obe:A 480 77 0.1558 0.0500 0.3117 0.034 7obe:B
12 5l0y:C 150 113 0.2013 0.2067 0.2743 0.15 5l0y:F, 5l0y:G, 5l0y:D, 5l0y:B
13 4j7g:A 448 72 0.1299 0.0446 0.2778 0.33 4j7g:B, 4j7h:A, 4j7h:B
14 6kev:A 317 45 0.1104 0.0536 0.3778 0.49
15 4i2w:A 904 93 0.1558 0.0265 0.2581 1.9 4i2z:A
16 7otm:A 3656 55 0.0974 0.0041 0.2727 6.8 7otp:A, 7otv:A, 7otw:A, 7oty:A
17 3hdm:A 285 74 0.1234 0.0667 0.2568 7.1 3hdn:A, 7pue:A, 2r5t:A
18 1lf9:A 674 21 0.0714 0.0163 0.5238 8.5 1lf9:B
19 8u87:A 621 22 0.0519 0.0129 0.3636 10.0 8u7y:A, 8u7y:B, 8u85:A, 8u85:C, 8u86:A, 8u86:C, 8u87:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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