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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVVEEYYEVL
DHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPVVSRELQALEARIRQ

The query sequence (length=144) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4apo:B 154 144 1.0000 0.9351 1.0000 1.42e-104 4aif:A, 4aif:B, 4apo:A
2 1qz2:A 285 126 0.2708 0.1368 0.3095 4.00e-10 1qz2:B
3 5njx:A 413 128 0.2222 0.0775 0.2500 5.57e-07 7a6w:AAA, 7a6w:BBB, 7a6x:AAA, 7aot:A, 7aou:A, 7apq:A, 7aps:A, 7aps:B, 7apt:A, 7apw:A, 7awf:A, 7awx:A, 7awx:B, 7b9y:A, 7b9z:A, 7ba0:A, 8ba6:A, 8baj:A, 5bxj:A, 8cca:A, 8ccb:A, 8ccc:A, 8ccd:A, 8cce:A, 8ccf:A, 8ccg:A, 8cch:A, 8chn:A, 8chp:A, 8chq:A, 8chr:A, 5dit:A, 5diu:A, 5div:A, 4drh:A, 4drh:D, 4dri:A, 4drk:A, 4drk:B, 4drm:A, 4drn:A, 4dro:A, 4drp:A, 4drq:A, 7ett:A, 7etu:A, 7etv:A, 9eu6:A, 9eu7:A, 9eu7:B, 9eu8:A, 9eu8:B, 9eu9:A, 9eu9:B, 9eua:A, 9eua:B, 9eub:A, 9eub:B, 9euc:A, 9euc:B, 9eud:A, 9eud:B, 9eue:A, 9eue:B, 9ey3:A, 9ey4:A, 4jfi:A, 4jfj:A, 4jfk:A, 4jfl:A, 4jfm:A, 3o5f:A, 3o5r:A, 5obk:A, 8pc2:G, 8pc2:H, 8pj8:A, 8pja:A, 7r0l:A, 8r5k:A, 6saf:A, 4tw6:A, 4tw7:A, 4tx0:A, 6tx4:A, 6tx5:A, 6tx6:A, 6tx7:A, 6tx9:A, 6txx:A, 4w9o:A, 4w9o:E, 4w9p:A, 4w9p:E, 4w9q:A
4 5mgx:G 266 112 0.2361 0.1278 0.3036 7.88e-04 5mgx:F, 5mgx:E, 5mgx:H
5 4cgv:C 126 116 0.2014 0.2302 0.2500 0.004 4cgv:D, 4cgv:A, 4cgv:B
6 6fdp:A 120 118 0.2153 0.2583 0.2627 0.004 4cgw:B, 6fdt:A
7 4cgw:A 115 111 0.2083 0.2609 0.2703 0.007
8 3kd7:A 102 73 0.1389 0.1961 0.2740 0.011 3kd7:B, 3kd7:C, 3kd7:D, 3kd7:E
9 6hft:A 312 142 0.2569 0.1186 0.2606 0.015
10 6hpg:A 121 33 0.1111 0.1322 0.4848 0.021 6hpg:B, 6hpg:C, 6hpg:D, 6hpg:E, 6hpg:F, 6q3q:A, 6q3q:B
11 7obe:A 480 70 0.1389 0.0417 0.2857 0.036 7obe:B
12 5l0y:C 150 113 0.2153 0.2067 0.2743 0.15 5l0y:F, 5l0y:G, 5l0y:D, 5l0y:B
13 6kev:A 317 45 0.1181 0.0536 0.3778 0.55
14 4i2w:A 904 93 0.1667 0.0265 0.2581 0.85 4i2z:A
15 4j7g:A 448 37 0.0903 0.0290 0.3514 2.1 4j7g:B, 4j7h:A, 4j7h:B
16 3hdm:A 285 74 0.1319 0.0667 0.2568 4.9 3hdn:A, 7pue:A, 2r5t:A
17 7otm:A 3656 55 0.1042 0.0041 0.2727 5.9 7otp:A, 7otv:A, 7otw:A, 7oty:A
18 1lf9:A 674 21 0.0764 0.0163 0.5238 6.4 1lf9:B
19 6m8t:A 189 15 0.0694 0.0529 0.6667 8.4 6m8u:A
20 8u87:A 621 22 0.0556 0.0129 0.3636 9.1 8u7y:A, 8u7y:B, 8u85:A, 8u85:C, 8u86:A, 8u86:C, 8u87:C
21 4lwm:A 205 34 0.0972 0.0683 0.4118 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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