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BioLiP
>protein
AEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKL

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1om2:A 95 64 1.0000 0.6737 1.0000 1.05e-40 3awr:A, 3ax2:A, 3ax2:C, 3ax5:C, 2v1s:D, 2v1s:E, 2v1t:A
2 5az7:A 434 62 0.9531 0.1406 0.9839 1.36e-35 3awr:B, 3ax2:E, 3ax2:G, 3ax3:A, 3ax3:G, 3ax3:C, 3ax3:E, 3ax5:A, 5az6:B, 5az6:A, 5az8:A, 2v1s:A, 2v1s:B, 2v1s:C, 2v1s:F, 2v1t:B
3 8a0m:B 964 35 0.1562 0.0104 0.2857 1.4
4 8a0m:D 975 35 0.1562 0.0103 0.2857 1.4
5 8a0c:A 1116 35 0.1562 0.0090 0.2857 1.4 8a0c:B, 8a0m:A, 8a0m:C
6 6hiy:DA 1426 55 0.2344 0.0105 0.2727 3.2
7 6hiv:DA 1557 55 0.2344 0.0096 0.2727 3.3 6hiw:DA, 7pub:DA
8 4b3g:A 614 54 0.2344 0.0244 0.2778 5.2 4b3g:B
9 2jie:A 445 53 0.2969 0.0427 0.3585 5.2 2o9r:A, 2o9t:A, 2z1s:A
10 6hxq:B 410 24 0.1406 0.0220 0.3750 8.7
11 6bvv:A 416 49 0.2031 0.0312 0.2653 8.7 6bw9:A, 6bwa:A, 6bwb:A, 8fub:A, 8fzm:A, 8fzm:C, 8hkw:A, 8hkw:B, 7jjl:A, 7lf4:A, 7lf4:C, 7lfc:A, 7rfy:A, 7rg5:A, 5xzx:A
12 7dnp:A 174 34 0.1719 0.0632 0.3235 9.1
13 8jal:B 573 21 0.1406 0.0157 0.4286 9.4 8jal:A, 8jaq:A, 8jaq:B, 8jaq:J, 8jaq:K, 8jar:A, 8jar:B, 8jas:A, 8jas:B, 8jas:K, 8jas:J, 8jau:A, 8jau:B, 8jav:A, 8jav:B, 8jav:J, 8jav:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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