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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADYQVYAWGINDPTEGERTVIKDPWDSVASEFTWISDGSTNYTTSRGNNGIAQSNPSGGPSYLNNYRPSSSSLSFKYPYS
VSSSPPSSYIDASIIQLFYTANIYHDLLYTLGFTEKAGNFEYNTNGQGGLGNDYVILNAQDGSGTNNANFATPPDGQPGR
MRMYVWTESTPYRDGSFEAGIVIHEYTHGLSNRLTGGPANSNCLNALESGGMGEGWSDFMATAIRLKPGDKRSTDYTMGE
WASNRAGGIRQYPYSTSLSTNPLTYTSVNSLNAVHAIGTVWASMLYEVLWNLIDKHGKNDAPKPTLRDGVPTDGKYLAMK
LVMDGMALQPCNPNFVQARDAILDADTALTGGENQCEIWTAFAKRGLGAGAKYSSRNRVGSTEVPSGVC

The query sequence (length=389) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4k90:A 389 389 1.0000 1.0000 1.0000 0.0
2 7z6t:AAA 388 388 0.7815 0.7835 0.7835 0.0
3 7qfy:A 388 388 0.7249 0.7268 0.7268 0.0
4 7qp3:A 391 391 0.6735 0.6701 0.6701 0.0
5 8aip:A 275 52 0.0514 0.0727 0.3846 5.9
6 4x95:B 377 92 0.0617 0.0637 0.2609 6.1 6mtw:A, 6mtw:B, 4x91:A, 4x91:B, 4x91:C, 4x91:D, 4x95:A, 4x97:A, 4x97:B, 4x97:C, 4x97:D
7 9fgo:A 149 73 0.0566 0.1477 0.3014 7.1 7da6:A, 4fvb:A, 4fvd:A, 7h2t:A, 7h2u:A, 7h2v:A, 7h2w:A, 7h2x:A, 7h2x:B, 7h2y:A, 7h2z:A, 7h30:A, 7h30:B, 7h31:A, 7h32:A, 7h33:A, 7h34:A, 7h35:A, 7h36:A, 7h37:A, 7h38:A, 7h39:A, 7h3a:A, 7h3b:A, 7h3c:A, 7h3d:A, 7h3e:A, 7h3f:A, 7h3g:A, 7h3g:B, 7h3h:A, 7h3i:A, 7h3j:A, 7h3k:A, 7h3l:A, 7h3m:A, 7h3n:A, 7h3o:A, 7h3p:A, 7h3q:A, 7h3r:A, 7h3s:A, 7h3t:A, 7h3u:A, 7h3v:A, 7h3v:B, 7h3w:A, 7h3w:B, 7h3x:A, 7h3y:A, 7h3z:A, 7h40:A, 7h41:A, 7h42:A, 7h43:A, 7h44:A, 7h45:A, 7h46:A, 7h47:A, 7h48:A, 7h49:A, 7h4a:A, 7h4b:A, 7h4c:A, 7h4d:A, 7h4e:A, 7h4f:A, 7h4g:A, 7h4h:A, 7h4i:A, 7h4j:A, 7h4k:A, 7h4l:A, 7h4m:A, 7h4n:A, 7h4o:A, 7h4p:A, 7h4q:A, 7h4r:A, 7h4s:A, 7h4t:A, 7h4u:A, 7h4v:A, 7h4w:A, 7h4x:A, 7h4y:A, 7h4z:A, 7h50:A, 7h50:B, 7h51:A, 7h51:B, 7h52:A, 7h52:B, 7h53:A, 7h53:B, 7h54:A, 7h54:B, 7h55:A, 7h55:B, 4mg3:A, 4mg3:B, 8poa:A, 8poa:B, 3w95:A, 8x77:F, 8x77:E, 8x77:H, 8x77:C, 8x8q:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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