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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPS
LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSS
FQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHLN
HQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKA
TNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPR
VQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELGGH

The query sequence (length=439) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jfg:A 439 439 0.9977 0.9977 0.9977 0.0 5a5f:A, 9bn8:A, 9bn9:A, 1eeh:A, 2jff:A, 2jfh:A, 1uag:A, 2uag:A, 3uag:A, 4uag:A, 2uuo:A, 2uup:A, 2vtd:A, 2vte:A, 8vw0:A, 8vw1:A, 8vw2:A, 2wjp:A, 2x5o:A, 2xpc:A, 2y1o:A, 2y66:A, 2y67:A, 2y68:A
2 8dp2:A 446 443 0.5171 0.5090 0.5124 2.08e-124 7u35:A, 7u35:B, 7u35:C
3 7ti7:A 442 432 0.4419 0.4389 0.4491 2.27e-111
4 4buc:A 427 398 0.2642 0.2717 0.2915 1.17e-35 4buc:B
5 4hv4:A 465 289 0.1617 0.1527 0.2457 5.59e-08 4hv4:B
6 8egn:A 309 250 0.1321 0.1877 0.2320 5.88e-08 9d9k:A, 8dof:A, 8egm:A, 8egm:B, 8egm:C, 8egm:D, 8egm:E, 8egm:F, 8egm:G, 8egm:H, 8egn:B, 8ewa:A, 8ewa:B, 6x9f:A, 6x9f:B, 6x9f:C, 6x9f:D, 6x9f:E, 6x9f:F, 6x9f:G, 6x9f:H, 6x9n:A, 6x9n:B, 6x9n:C, 6x9n:D, 6x9n:E, 6x9n:F, 6x9n:G, 6x9n:H
7 8g6p:A 508 279 0.1640 0.1417 0.2581 8.51e-08
8 1gqy:B 469 307 0.1708 0.1599 0.2443 2.57e-07 1gqy:A, 1p31:A, 1p31:B, 1p3d:A, 1p3d:B
9 4qf5:A 459 284 0.1708 0.1634 0.2641 4.52e-07 4qdi:A, 4qf5:B, 4ziy:A
10 6vr7:A 485 248 0.1390 0.1258 0.2460 5.89e-07
11 7lgm:A 719 176 0.1116 0.0682 0.2784 0.002 7lgm:B
12 3zl8:A 427 382 0.2050 0.2108 0.2356 0.003
13 6cau:A 307 265 0.1458 0.2085 0.2415 0.007
14 7q8e:A 397 276 0.1344 0.1486 0.2138 0.017 6gs2:B, 6gs2:D, 6h5e:B, 6h5e:D, 7q8e:C
15 4cvm:A 443 296 0.1777 0.1761 0.2635 0.058 4cvk:A, 4cvl:A
16 2esd:A 474 125 0.0752 0.0696 0.2640 0.35 2esd:B, 2esd:C, 2esd:D, 2euh:A, 2euh:B, 2euh:C, 2euh:D, 2id2:A, 2id2:B, 2id2:C, 2id2:D, 2qe0:A, 2qe0:B, 2qe0:C, 2qe0:D, 1qi1:A, 1qi1:B, 1qi1:C, 1qi1:D
17 2wtz:B 508 348 0.1777 0.1535 0.2241 0.54 2wtz:A, 2wtz:D, 2xja:A, 2xja:B, 2xja:C, 2xja:D
18 4c12:A 493 235 0.1253 0.1116 0.2340 0.58 4c13:A
19 3lxd:A 409 66 0.0501 0.0538 0.3333 0.93
20 2am1:A 454 201 0.1048 0.1013 0.2289 2.2 2am2:A, 3zm5:A, 3zm6:A
21 4bub:B 483 169 0.1071 0.0973 0.2781 2.6 4bub:A
22 3ihg:A 535 69 0.0501 0.0411 0.3188 3.9 3ihg:B, 3ihg:C
23 4are:A 678 111 0.0683 0.0442 0.2703 5.0 2y50:A, 2y6i:A, 7z5u:A, 7zbv:A
24 2wtz:C 439 225 0.1116 0.1116 0.2178 5.7
25 2ww9:A 490 40 0.0364 0.0327 0.4000 6.2 2wwa:A
26 5xla:A 490 87 0.0524 0.0469 0.2644 7.1 3eyk:B, 5xl3:B, 5xl3:A, 5xl4:A, 5xl4:B, 5xl6:A, 5xl7:A, 5xl7:B, 5xl9:A, 5xla:B, 5xlc:A, 5xlc:B, 5xld:A, 5xld:B
27 5w81:A 1173 129 0.0729 0.0273 0.2481 7.4
28 3pyz:A 410 100 0.0615 0.0659 0.2700 7.8 3n2a:A, 3qcz:A
29 7yj0:D 622 34 0.0296 0.0209 0.3824 8.1 7yj0:A, 7yj0:B, 7yj0:C
30 4y81:C 240 35 0.0273 0.0500 0.3429 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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