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BioLiP
>protein
ADYKIDKEGQHAFVNFRIQHLGYSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKY
PQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGKIKLKDFNIKTDLGPASQEVDLI
ISVEGVQQK

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1y0g:A 169 169 1.0000 1.0000 1.0000 1.45e-123 1y0g:B, 1y0g:C, 1y0g:D
2 7bwl:A 168 168 0.7811 0.7857 0.7857 1.81e-98
3 1wub:A 176 163 0.3491 0.3352 0.3620 3.90e-30
4 5w2r:A 171 167 0.3669 0.3626 0.3713 1.18e-26 5w2z:A, 5w30:A, 5w39:A, 5w3a:A, 5w3c:A
5 3hpe:A 164 145 0.3314 0.3415 0.3862 2.53e-23 3hpe:B
6 5ixg:B 169 174 0.3491 0.3491 0.3391 1.51e-18 5ixg:C, 5ixg:A, 5ixg:D
7 5ixh:B 161 126 0.2189 0.2298 0.2937 2.33e-08 5ixh:A
8 1lfw:A 468 45 0.0947 0.0342 0.3556 0.11
9 8uhe:K 593 62 0.1124 0.0320 0.3065 3.0
10 8qh3:A 1310 55 0.1006 0.0130 0.3091 4.2 8c4u:A, 8c4v:A, 8p1m:A, 8p1n:A, 8qgt:A
11 7r04:A 2326 33 0.0769 0.0056 0.3939 5.8
12 7pgr:N 2423 33 0.0769 0.0054 0.3939 5.8 2d4q:A, 2d4q:B, 2e2x:B, 3p7z:B, 3pg7:B, 7pgq:F, 7pgr:F, 7pgs:F, 7pgt:F, 7pgu:F, 7pgu:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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