Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ADYDLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAV
FALPYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLEVPNAATNLAYAKY
VGASPTPMAFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSNETYKELPEDLQKVVKDAAEN
AAKYHTKLFVDGEKDLVTFFEKQGVKITHPDLVPFKESMKPYYAEFVKQTGQKGESALKQIEAINPHH

The query sequence (length=308) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3b50:A 310 306 0.9903 0.9839 0.9967 0.0 2cex:A, 2cex:B, 2cex:C, 2cex:D, 2cey:A, 8cp7:A, 6h75:A, 6h76:A, 2v4c:A, 2wx9:A, 2wyk:A, 2wyp:A, 2xa5:A, 2xwi:A, 2xwk:A, 2xwo:A, 2xwv:A, 2xxk:A
2 4mmp:A 308 301 0.7208 0.7208 0.7375 1.75e-161
3 4mnp:A 305 303 0.6688 0.6754 0.6799 3.82e-151
4 7t3e:A 300 297 0.4935 0.5067 0.5118 5.48e-107 7t3e:B
5 4mag:A 307 288 0.4773 0.4788 0.5104 1.58e-104 7a5q:A, 7a5q:B
6 4oan:A 312 290 0.3117 0.3077 0.3310 3.21e-46 4oan:B
7 4pdd:A 303 301 0.3117 0.3168 0.3189 3.86e-45 4pdd:B, 4pdd:C
8 7bbr:A 310 264 0.2890 0.2871 0.3371 2.22e-44 7bcn:A, 7bco:A, 7bco:B, 7bcp:A, 7bcr:A
9 4nq8:B 301 287 0.2955 0.3023 0.3171 4.33e-44 4nq8:A
10 4pak:A 304 305 0.3117 0.3158 0.3148 2.11e-43 4p9k:A
11 4pc9:A 300 271 0.2727 0.2800 0.3100 3.22e-39 4pcd:A
12 4pdh:A 301 290 0.2857 0.2924 0.3034 4.43e-39
13 4o8m:A 303 262 0.2630 0.2673 0.3092 5.89e-36 4o8m:B, 4o8m:C, 4o8m:D, 4o8m:E, 4o8m:F, 4o8m:G, 4o8m:H
14 4pbq:A 304 249 0.2468 0.2500 0.3052 1.70e-35 4pbq:B, 4pbq:C
15 4p3l:A 303 274 0.2695 0.2739 0.3029 2.07e-35 4p1l:A, 4p1l:B
16 4n8y:A 300 286 0.2695 0.2767 0.2902 2.39e-35 4n8y:B
17 4p8b:A 314 290 0.2857 0.2803 0.3034 5.28e-34
18 4ngu:A 317 290 0.2987 0.2902 0.3172 5.98e-34
19 4x8r:A 304 278 0.2727 0.2763 0.3022 1.68e-33 4x8r:B
20 4xeq:B 304 280 0.2370 0.2401 0.2607 5.70e-33 4xeq:A, 4xeq:C, 4xeq:D
21 4ovt:A 301 263 0.2403 0.2458 0.2814 6.53e-33 4ovt:B
22 4ovr:A 298 285 0.2532 0.2617 0.2737 2.81e-32 4ovr:B
23 4n8g:A 325 292 0.2597 0.2462 0.2740 4.99e-32 4n8g:B, 4n8g:C, 4n8g:D
24 4nhb:B 311 244 0.2403 0.2379 0.3033 9.84e-31 4nhb:A
25 8te9:B 309 273 0.2532 0.2524 0.2857 2.33e-30 8te9:A
26 4pai:A 308 220 0.2175 0.2175 0.3045 5.86e-30
27 4pf8:A 300 289 0.2695 0.2767 0.2872 1.00e-29 4pf8:B
28 4mij:A 302 260 0.2273 0.2318 0.2692 5.66e-28 4mhf:A
29 4n15:A 301 272 0.2338 0.2392 0.2647 6.35e-28 4n17:A
30 4x04:A 301 284 0.2338 0.2392 0.2535 1.49e-27 4x04:B, 4x04:C, 4x04:D
31 3fxb:A 310 290 0.2662 0.2645 0.2828 1.95e-26 3fxb:B
32 4n91:A 308 291 0.2468 0.2468 0.2612 6.09e-26
33 3gyy:D 311 290 0.2532 0.2508 0.2690 1.05e-23 3gyy:A, 3gyy:B, 3gyy:C, 2vpn:A, 2vpn:B, 2vpo:A, 2vpo:B
34 4ovq:A 302 266 0.2338 0.2384 0.2707 1.11e-23
35 4nx1:A 308 234 0.2143 0.2143 0.2821 1.13e-23 4nx1:B, 4ovp:A, 4ovp:B
36 4n6k:A 311 296 0.2468 0.2444 0.2568 2.68e-23
37 4xfe:A 306 231 0.1721 0.1732 0.2294 1.77e-21
38 4nap:D 310 290 0.2240 0.2226 0.2379 1.77e-17 4nap:A, 4nap:B, 4nap:C, 4pgn:A, 4pgn:B, 4pgn:C, 4pgn:D, 4pgp:A, 4pgp:B, 4pgp:C, 4pgp:D
39 7nra:BBB 328 230 0.2078 0.1951 0.2783 5.48e-16 7nra:AAA
40 4pfb:A 308 265 0.2013 0.2013 0.2340 6.44e-16
41 4n6d:A 319 277 0.1948 0.1881 0.2166 2.02e-14
42 7nrr:AAA 329 239 0.2045 0.1915 0.2636 7.84e-14 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
43 4pet:A 329 238 0.2078 0.1945 0.2689 3.43e-12 4pet:B
44 5i7i:B 320 240 0.2078 0.2000 0.2667 8.59e-12 5i7i:A, 5izz:A
45 5cm6:A 331 237 0.2078 0.1934 0.2700 2.66e-10 5cm6:B
46 2zzv:A 330 321 0.2208 0.2061 0.2118 5.37e-09 2zzv:B, 2zzw:A, 2zzw:B, 2zzx:C
47 4pe3:A 315 167 0.1331 0.1302 0.2455 2.72e-08
48 4xf5:A 317 241 0.1688 0.1640 0.2158 7.56e-08 4uab:A, 4uab:B, 4xf5:B
49 4p56:B 317 167 0.1623 0.1577 0.2994 9.67e-08 4p56:A, 4p56:C
50 2pfy:A 301 229 0.1721 0.1761 0.2314 3.14e-07 2pfy:B, 2pfy:C, 2pfy:D
51 7e9y:A 563 191 0.1494 0.0817 0.2408 1.38e-06
52 2pfz:A 301 278 0.2078 0.2126 0.2302 1.95e-05
53 2hzl:B 337 171 0.1201 0.1098 0.2164 3.55e-04 2hzl:A
54 6wgm:A 304 221 0.1623 0.1645 0.2262 0.002
55 7nqg:AAA 317 282 0.1948 0.1893 0.2128 0.008
56 2pyu:A 208 90 0.0779 0.1154 0.2667 0.080 2q16:A, 2q16:B
57 7ug8:B 330 116 0.0909 0.0848 0.2414 0.11 7ug8:A
58 3ven:A 571 54 0.0649 0.0350 0.3704 0.91 3veo:A, 3ver:A, 3ves:A, 3vet:A, 3vew:A, 3vex:A, 3vez:A, 3vf2:A, 3vf4:A
59 4q6r:B 444 68 0.0682 0.0473 0.3088 2.7 4q6r:A
60 6t4h:A 771 53 0.0519 0.0208 0.3019 7.2
61 5v93:d 201 59 0.0552 0.0846 0.2881 7.2 7kgb:d, 7msc:d, 7msh:d, 7msm:d, 7msz:d, 7mt2:d, 7mt3:d, 7mt7:d, 7sfr:d
62 3tvt:A 255 62 0.0552 0.0667 0.2742 7.7

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218