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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADTVYDVTTWAGATVSPYVDIGAVINQIIADIKSKQTTQTTRPGAVIYIPPGHYDLLTRVVIDVSFLQIKGAGHGFLSEA
IRDESQTGSWVETLPGASHIRVRNNDGHNEAFLVSRTGAPATVGRLNSIVFQDFCLDGVNASKPYLPGNGKTGISFQSDN
DAVRIEGMGFVYLAHALIIKGADAPNITNNFIAECGSSIELTGASQVAKITNNFLISAWAGYSIFAENAEGLQISGNTIL
WACNITLSSGNRASITSNKLLSNFPSQIALLNNSSENLISANHFRRVHGDGTSTRFDDKFGMVHIAGNKNTVTGNQFSFD
VPSQNITPAGQDPTIVLVKSGDNNYLASNHITSNVAAKVVLDASTTATRVLHSATTAQLDALTTNHFMVATPSHHHHHH

The query sequence (length=399) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8hui:C 399 399 1.0000 1.0000 1.0000 0.0 8hui:A, 8hui:B
2 2inv:A 399 404 0.4937 0.4937 0.4876 2.59e-122 2inv:B, 2inv:C
3 9j4i:C 403 409 0.4662 0.4615 0.4548 2.73e-117 9j4i:B, 9j4i:A, 9j4j:A, 9j4j:B, 9j4j:C, 9j4k:B, 9j4k:A, 9j4k:C
4 5zku:F 443 405 0.4135 0.3725 0.4074 1.01e-85 5zku:A, 5zku:B, 5zku:C, 5zku:D, 5zku:E, 5zkw:A, 5zkw:B, 5zkw:C, 5zkw:E, 5zkw:F, 5zl4:A, 5zla:A, 5zla:D, 5zla:B, 5zla:C, 5zla:F, 5zla:E
5 5m0p:A 424 58 0.0576 0.0542 0.3966 0.17 4l40:A, 4l54:A, 5m0n:A, 5m0o:A, 5m0o:C, 5m0p:B
6 5m60:A 755 63 0.0551 0.0291 0.3492 1.0
7 3az8:F 146 40 0.0401 0.1096 0.4000 2.1 3az8:C, 3az8:D, 3az8:E, 3az8:O, 3az8:P, 3az8:Q, 3az8:R, 3az9:C, 3az9:D, 3az9:E, 3az9:F, 3az9:M, 3az9:N, 3az9:O, 3az9:P, 3az9:Q, 3az9:R, 3aza:A, 3aza:B, 3aza:C, 3aza:D, 3aza:M, 3aza:N, 3aza:O, 3aza:P, 3aza:Q, 3aza:R, 3aza:U, 3aza:V, 3azb:C, 3azb:D, 3azb:G, 3azb:H, 3azb:I, 3azb:J, 3azb:O, 3azb:P
8 6xw2:A 387 67 0.0551 0.0568 0.3284 5.6
9 5g5y:A 494 86 0.0602 0.0486 0.2791 9.1 5g5y:B, 5g5z:A, 5g5z:B, 5g5z:C, 5g5z:D, 5g60:A, 5g60:B, 5g60:C, 5g60:D, 5g61:A, 5g61:B, 5g61:C, 5g61:D, 5g62:A, 5g62:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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