Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADRIELRGLTVHGRHGVYDHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPPRKLIETVGAEIA
DHVMDDQRVHAVEVAVHKPQAPIPQTFDDVAVVIRRSR

The query sequence (length=118) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1nbu:A 118 118 1.0000 1.0000 1.0000 4.19e-81 1nbu:D, 1nbu:B, 1nbu:C, 1nbu:E, 1nbu:H, 1nbu:F, 1nbu:G
2 5f3m:A 120 118 0.3475 0.3417 0.3475 3.02e-18 5f3m:B, 5far:A, 5far:B, 5far:C, 5far:D, 5far:E, 5far:H, 5far:F, 5far:G, 8sv5:A, 8sv5:G, 8sv5:B, 8sv5:H, 8sv5:C, 8sv5:D, 8sv5:F, 8sv5:E
3 2dhn:A 121 116 0.3305 0.3223 0.3362 4.14e-16 2nm2:A, 2nm2:B, 2nm2:C, 2nm2:D, 2nm3:A, 1rri:A, 1rrw:A, 1rry:A, 1rs2:A, 1rs4:A, 1rsd:A, 1rsi:A, 1u68:A
4 2o90:A 115 115 0.3051 0.3130 0.3130 1.72e-08
5 7su7:D 119 117 0.2966 0.2941 0.2991 1.30e-07 6ojo:A, 6ojo:C, 6ojo:B, 6ojo:D, 7su4:A, 7su4:D, 7su4:B, 7su4:C, 7su6:A, 7su6:C, 7su6:B, 7su6:D, 7su7:B, 7su7:A, 7su7:C, 7su8:A, 7su8:B
6 1zl9:A 207 59 0.1864 0.1063 0.3729 0.58 1zl9:B
7 3dfi:A 242 29 0.1186 0.0579 0.4828 2.2
8 8e1h:A 332 18 0.0847 0.0301 0.5556 6.3 8e1i:A, 8e1j:A, 8e1j:B, 8e1s:A, 8e1s:B, 8e1t:A, 8e1t:B, 8e1v:A
9 3eef:A 173 29 0.1017 0.0694 0.4138 9.5 3eef:B
10 1wvc:A 254 38 0.0932 0.0433 0.2895 9.6 1tzf:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218