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BioLiP
>protein
ADRIELRGLTVHGRHGVYAHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPPRKLIETVGAEIA
DHVMDDQRVHAVEVAVHKPQAPIPQTFDDVAVVIRRSR

The query sequence (length=118) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1nbu:A 118 118 0.9915 0.9915 0.9915 4.34e-80 1nbu:D, 1nbu:B, 1nbu:C, 1nbu:E, 1nbu:H, 1nbu:F, 1nbu:G
2 5f3m:A 120 118 0.3475 0.3417 0.3475 1.72e-18 5f3m:B, 5far:A, 5far:B, 5far:C, 5far:D, 5far:E, 5far:H, 5far:F, 5far:G, 8sv5:A, 8sv5:G, 8sv5:B, 8sv5:H, 8sv5:C, 8sv5:D, 8sv5:F, 8sv5:E
3 2dhn:A 121 116 0.3305 0.3223 0.3362 2.19e-16 2nm2:A, 2nm2:B, 2nm2:C, 2nm2:D, 2nm3:A, 1rri:A, 1rrw:A, 1rry:A, 1rs2:A, 1rs4:A, 1rsd:A, 1rsi:A, 1u68:A
4 2o90:A 115 100 0.2627 0.2696 0.3100 3.26e-07
5 7su7:D 119 117 0.2881 0.2857 0.2906 2.06e-06 6ojo:A, 6ojo:C, 6ojo:B, 6ojo:D, 7su4:A, 7su4:D, 7su4:B, 7su4:C, 7su6:A, 7su6:C, 7su6:B, 7su6:D, 7su7:B, 7su7:A, 7su7:C, 7su8:A, 7su8:B
6 1zl9:A 207 59 0.1864 0.1063 0.3729 0.56 1zl9:B
7 7jil:R 104 71 0.1441 0.1635 0.2394 1.8
8 3dfi:A 242 29 0.1186 0.0579 0.4828 2.3
9 1kc1:A 298 92 0.1864 0.0738 0.2391 6.8 1kc3:A, 1n2s:A
10 3eef:A 173 29 0.1017 0.0694 0.4138 9.6 3eef:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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