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BioLiP
>protein
ADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITSHREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLH
GTEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMRE
YVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNY
HREHFGTTWGIQDANGEPAHTGCVAFGMDRLAVAMFHTHGTDLSAWPAKVRDILGLQ

The query sequence (length=297) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3mf2:A 299 297 1.0000 0.9933 1.0000 0.0 4h2s:A, 4h2s:B, 4h2t:A, 4h2t:B, 4h2u:A, 4h2u:B, 4h2v:A, 4h2v:B, 4h2w:A, 4h2w:B, 4h2x:A, 4h2x:B, 4h2y:A, 4h2y:B, 3mey:A, 3mf1:A, 3mf2:B, 3pzc:A
2 3pzc:B 276 296 0.9293 1.0000 0.9324 0.0 3mey:B, 3mf1:B
3 3w3s:A 527 289 0.2458 0.1385 0.2526 2.82e-18
4 2cjb:B 495 272 0.1785 0.1071 0.1949 0.002 2cim:A, 2cim:B, 2cj9:A, 2cj9:B, 2cja:A, 2cja:B, 2cjb:A
5 6r1n:A 420 69 0.0808 0.0571 0.3478 0.11
6 6ote:A 409 68 0.0539 0.0391 0.2353 0.31
7 6int:A 413 80 0.0842 0.0605 0.3125 0.55 6int:B, 6int:C, 6int:D, 6int:E, 6int:F, 6int:G, 6int:H
8 1wnb:A 474 67 0.0572 0.0359 0.2537 1.0 1wnb:B, 1wnb:C, 1wnb:D, 1wnd:A, 1wnd:B, 1wnd:C, 1wnd:D
9 2gu2:A 307 100 0.0943 0.0912 0.2800 1.2 2gu2:B, 2q4z:B
10 2dq0:A 447 121 0.0909 0.0604 0.2231 1.4 2dq0:B, 2zr2:A, 2zr2:B
11 1i7e:A 237 61 0.0673 0.0844 0.3279 1.6
12 5v8f:4 741 45 0.0505 0.0202 0.3333 3.8 5bk4:C, 5bk4:4, 6eyc:4, 6f0l:C, 3ja8:4, 7p30:4, 7p30:C, 7p5z:C, 7p5z:4, 7pt6:4, 7pt6:D, 7pt7:4, 7pt7:D, 6rqc:4, 7v3u:4, 7v3u:D, 7v3v:4, 7v3v:D, 7w8g:4, 7w8g:D
13 2wda:A 742 108 0.0875 0.0350 0.2407 4.2
14 2w9m:B 559 47 0.0606 0.0322 0.3830 5.8 2w9m:A
15 6chs:A 460 115 0.0909 0.0587 0.2348 6.9 6cdd:A, 6cdd:B
16 5z9s:A 765 43 0.0539 0.0209 0.3721 7.1 5z9s:B
17 5ey5:A 261 114 0.0976 0.1111 0.2544 7.9 5ey5:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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