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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADPEKRKLIQQQLVLLLHAHKCQRREQANGEVRACSLPHCRTMKNVLNHMTHCQAGKACQVAHCASSRQIISHWKNCTRH
DCPVCLPLKNASDKR

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hou:A 171 95 1.0000 0.5556 1.0000 1.29e-66 2ka4:A, 1l3e:B, 1l8c:A, 7lvs:B, 2lww:A, 1p4q:B, 7qgs:A, 1r8u:B, 1u2n:A
2 3t92:A 113 91 0.3263 0.2743 0.3407 0.002
3 6fgs:A 130 92 0.3368 0.2462 0.3478 0.002
4 7xez:A 163 91 0.3368 0.1963 0.3516 0.003 8e1d:A, 1f81:A, 2mzd:A, 7xfg:A
5 6fgn:A 124 91 0.3368 0.2581 0.3516 0.003
6 3io2:A 109 85 0.2947 0.2569 0.3294 0.004 3p57:P
7 5hp0:A 122 93 0.3474 0.2705 0.3548 0.012
8 5hpd:A 158 93 0.3474 0.2089 0.3548 0.017 2ka6:A, 2kje:A
9 2k9h:A 57 39 0.1158 0.1930 0.2821 0.39
10 3vb9:B 462 45 0.1895 0.0390 0.4000 0.76 3vb9:D
11 8em4:A 3818 69 0.2737 0.0068 0.3768 3.4 8em4:B
12 8r5n:A 165 36 0.1053 0.0606 0.2778 4.6 8r5n:B, 8r6a:A, 8r6a:B, 8r6b:A
13 4qu6:A 99 23 0.1053 0.1010 0.4348 4.9
14 3wgc:B 333 24 0.1053 0.0300 0.4167 6.8 3wgb:A, 3wgb:B, 3wgb:C, 3wgb:D, 3wgc:A, 3wgc:C, 3wgc:D
15 6je8:A 469 54 0.1474 0.0299 0.2593 7.5 6jea:A, 6jeb:A
16 8em7:A 4378 69 0.2737 0.0059 0.3768 8.2 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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