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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADPALADVCRTKLPSQAQDTLALIAKNGPYPYNRDGVVFENRESRLPKKGNGYYHEFTVVTPGSNDRGTRRVVTGGYGEQ
YWSPDHYATFQEIDPRC

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3d5i:B 97 97 1.0000 1.0000 1.0000 1.74e-70 3d4a:B, 3dgy:A, 3dgy:B, 3dh2:A, 3dh2:B, 3dh2:C, 3dh2:D
2 1gmp:A 96 91 0.5464 0.5521 0.5824 2.52e-35 1gmp:B, 1gmr:A, 1gmr:B, 1rge:A, 1rsn:A, 1rsn:B, 2sar:A
3 1gov:A 108 58 0.2371 0.2130 0.3966 0.002 1gov:B, 1goy:A, 1goy:B
4 1rnb:A 109 58 0.1959 0.1743 0.3276 0.067 1a2p:C, 1b2z:C, 1brg:C, 1brh:C, 1brj:C, 1brk:C, 1brn:L, 1brn:M, 2f4y:C, 2f56:A, 2f56:B, 2f5m:B, 2f5m:C, 2f5w:C
5 3uwq:B 224 73 0.2784 0.1205 0.3699 0.18 3uwq:A
6 7pkq:e 176 44 0.1237 0.0682 0.2727 1.9
7 8e1u:A 1126 32 0.1134 0.0098 0.3438 3.4 8e1u:B, 8e1u:C, 8e1u:D, 8e1u:E, 8e1u:F, 8e1u:G, 8e1u:H
8 8dy9:I 303 28 0.1340 0.0429 0.4643 5.8 8dy7:I
9 5o8z:B 209 24 0.1031 0.0478 0.4167 6.4 5o8z:A, 5vxn:A, 5vxn:B, 5vxn:C, 5vxn:D, 5w43:A, 5w43:B, 6zii:B, 6zii:A, 6zix:B, 6zix:A, 6zj2:D, 6zj2:C, 6zj2:B, 6zj2:A
10 5aye:A 335 34 0.1340 0.0388 0.3824 6.7 5aye:B, 5aye:C, 5aye:D, 5aye:E, 5aye:F
11 1ucr:B 75 44 0.1134 0.1467 0.2500 8.0 1ucr:A
12 4rpn:A 219 36 0.1134 0.0502 0.3056 8.2 4rpn:D, 4rpn:C, 4rpn:B, 4rpo:A, 4rpo:B, 4rpo:C, 4rpo:D
13 4ox3:A 214 39 0.1237 0.0561 0.3077 8.9
14 6zca:Y 1127 31 0.1237 0.0106 0.3871 9.1 6zfb:Y, 6zfb:y
15 7f75:D 1142 31 0.1237 0.0105 0.3871 9.2 7ckq:D
16 6wvk:D 1184 31 0.1237 0.0101 0.3871 9.3 6wvj:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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