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BioLiP
>protein
ADPALADVCRTKLPSQAQDTLALIAKNGPYPYNRDGVVFENRESRLPKKGNGYYHEFTVVTPDRGTRRVVTGGYGEQYWS
PDHYATFQEIDPRC

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3d5i:B 97 97 1.0000 0.9691 0.9691 4.32e-66 3d4a:B, 3dgy:A, 3dgy:B, 3dh2:A, 3dh2:B, 3dh2:C, 3dh2:D
2 1gmp:A 96 91 0.5532 0.5417 0.5714 2.99e-32 1gmp:B, 1gmr:A, 1gmr:B, 1rge:A, 1rsn:A, 1rsn:B, 2sar:A
3 1gov:A 108 57 0.2447 0.2130 0.4035 2.36e-04 1gov:B, 1goy:A, 1goy:B
4 1rnb:A 109 57 0.1915 0.1651 0.3158 0.055 1a2p:C, 1b2z:C, 1brg:C, 1brh:C, 1brj:C, 1brk:C, 1brn:L, 1brn:M, 2f4y:C, 2f56:A, 2f56:B, 2f5m:B, 2f5m:C, 2f5w:C
5 2xe4:A 721 66 0.2128 0.0277 0.3030 3.7
6 5aye:A 335 34 0.1383 0.0388 0.3824 6.2 5aye:B, 5aye:C, 5aye:D, 5aye:E, 5aye:F
7 4ox3:A 214 39 0.1277 0.0561 0.3077 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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