Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADMTISVPQLDCPLSRPVHPEGERADAYAVEWLRGVGLMADEADAAPVLAVGLGRLAACYVDENASWDTLAFMTILLAWY
AEYDDRAIDSTDGLTDAEVAELHRALGEILRDRPAPDPSDPVQRGLADVWRTLNGLASDWDRAAFVDTTLRYFEANRYER
VNIRRGIPPTPSAHIGMRRHGGHVYGMYILGAAVNGYRPERRVLDHAAVRELETLAANYTSWANDLHSFAREHRMGQVNN
LVWSVHHHEGLTFQQAADRVADLCDKELAAYLELRQTLPELGIPLTGATGRHVRFLEDMMWSMVDWSARSA

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8b4l:C 311 311 1.0000 1.0000 1.0000 0.0 8b4l:E, 8b4l:A, 8b4l:B, 8b4l:D, 8b4l:F, 8b4m:B, 8b4m:D, 8b4m:E, 8b4m:F
2 7zrn:A 301 302 0.2444 0.2525 0.2517 2.66e-18 7zrn:B
3 5dz2:A 322 326 0.2797 0.2702 0.2669 1.58e-17 5dz2:B
4 5nx5:A 287 269 0.2283 0.2474 0.2639 3.25e-14
5 4okm:A 346 283 0.2058 0.1850 0.2261 1.98e-12 4okm:B, 4okm:C, 4okz:A, 4okz:B, 4okz:C, 4okz:D
6 5nx7:A 308 287 0.2315 0.2338 0.2509 2.32e-10 5nx6:A, 5nx6:B, 5nx7:B
7 6oh6:A 311 135 0.1350 0.1350 0.3111 1.05e-08 6oh7:A
8 7ofl:A 335 166 0.1222 0.1134 0.2289 1.53e-08 7ofl:B
9 6wkd:A 280 228 0.1897 0.2107 0.2588 2.41e-08 6wkf:A, 6wkh:A
10 8h6u:A 338 199 0.1318 0.1213 0.2060 2.95e-07 8h6u:B, 8h6u:C, 8h6u:D
11 6ax9:A 340 301 0.2444 0.2235 0.2525 2.91e-06 6axm:A, 6axn:A, 6axu:A, 3kb9:A, 7kj8:A, 7kj9:A, 7kjd:A, 7kje:A, 7kjf:A, 7kjg:A, 3lg5:A, 4ltz:A, 4luu:A, 4lxw:A, 4lz0:A, 4lz3:A, 4lzc:A, 6ofv:A, 8su1:A, 8su2:A, 8su3:A, 8su4:A, 8su5:A, 8v3k:A
12 6wkj:A 251 134 0.1318 0.1633 0.3060 3.60e-06
13 8gr7:A 326 305 0.1929 0.1840 0.1967 3.26e-04 8gr7:B
14 4mc3:A 287 295 0.2219 0.2404 0.2339 0.26
15 5y4c:A 249 94 0.0707 0.0884 0.2340 0.97
16 5jb3:R 113 66 0.0675 0.1858 0.3182 1.1 5jbh:R, 6sw9:R, 6swc:R, 6swd:R, 4v4n:BR, 4v6u:AR, 7zag:R, 7zah:R, 7zai:R, 7zhg:R
17 7uus:R 170 50 0.0643 0.1176 0.4000 2.3 7utd:R, 7utd:S, 7utd:T, 7utd:Q, 7uus:Q, 7uus:T, 7uus:S
18 3e3u:A 196 69 0.0675 0.1071 0.3043 2.7
19 7pah:f 145 59 0.0482 0.1034 0.2542 6.8 7ood:f, 7p6z:f, 7pai:f, 7paj:f, 7pak:f, 7pal:f, 7pam:f, 7pan:f, 7pao:f, 7paq:f, 7par:f, 7pas:f, 7pat:f, 7pau:f, 7ph9:f, 7pha:f, 7phb:f, 7phc:f, 7pi8:f, 7pi9:f, 7pia:f, 7pib:f, 7pic:f, 7pio:f, 7pip:f, 7piq:f, 7pir:f, 7pis:f, 7pit:f
20 4y28:G 91 51 0.0514 0.1758 0.3137 7.6
21 7dve:A 498 109 0.1093 0.0683 0.3119 7.7
22 1ahp:A 796 29 0.0482 0.0188 0.5172 8.8 1ahp:B, 2asv:A, 2asv:B, 2av6:A, 2av6:B, 2aw3:A, 2aw3:B, 2azd:A, 2azd:B, 1e4o:A, 1e4o:B, 2ecp:A, 2ecp:B, 1l5v:A, 1l5v:B, 1l5w:A, 1l5w:B, 1l6i:A, 1l6i:B, 1qm5:A, 1qm5:B, 8rvk:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218