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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADLVNLQYKIRRDPKSYAQEFYDQWLAYDAQRQIFFSSPATASSEDIKKFHDLVDLVAHVADLYPDITAPFPDHLKQLLT
QHHTTLDKDLREKVVGSLVLLRRKDVIDSVSLLTTLFPILISSPSKSLRTLIYTKIISDLRESNAKATNHKLNRTIQTVL
HNLLTSDRTSSKGLWACRITRELWRRQIWTDARPCDVMKEACLSDNEKVVVGGCRFFLGGDKNFSALHLINDPQGFAEKL
FQKHLQNLKNKFTLENRLLVLQLVTRLVGLHKLTVLPLYSWFVRYLTPKQLNVTTFLACLAQATHNLVPPDVIEPLVVKI
ANEFVSEASAAEVAAAGLNAIREVAMRQPLCMSETLLQDLVLYQKSKDKGVMMAAKGLQSLYREVYPEML

The query sequence (length=390) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8pv4:CR 390 390 1.0000 1.0000 1.0000 0.0
2 8pv6:CR 516 429 1.0000 0.7558 0.9091 0.0 8pv8:CR
3 6ylg:t 431 410 0.5000 0.4524 0.4756 1.85e-130 6ylh:t
4 8idy:u 554 390 0.4077 0.2870 0.4077 1.06e-95 8inf:f, 8ink:N, 8ipy:N
5 8fl2:NT 501 424 0.4103 0.3194 0.3774 3.60e-93 8fl3:NT, 8fl4:NT
6 5jcs:r 333 328 0.3026 0.3544 0.3598 8.67e-37
7 5f5u:D 202 75 0.0590 0.1139 0.3067 0.38 5f5u:G, 5f5v:A, 5f5v:D
8 3c0s:A 281 40 0.0410 0.0569 0.4000 1.6 3bzj:A, 3c0q:A, 2j6v:A, 2j6v:B
9 2wmg:A 553 116 0.0692 0.0488 0.2328 1.7 2wmh:A
10 8c05:A 305 26 0.0333 0.0426 0.5000 2.2
11 4luj:A 214 95 0.0538 0.0981 0.2211 2.5 4luj:B
12 3ec7:A 336 85 0.0538 0.0625 0.2471 3.4 3ec7:B, 3ec7:C, 3ec7:D, 3ec7:E, 3ec7:F, 3ec7:G, 3ec7:H
13 7t3u:C 1575 42 0.0462 0.0114 0.4286 6.3
14 4uvq:A 263 161 0.1000 0.1483 0.2422 6.8
15 5irm:C 770 50 0.0385 0.0195 0.3000 9.1 5irl:A, 5irm:A, 5irn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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