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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ADKIKNAKIVFVVGGPGSGKGTQCEKIVAKYGYTHLSSGDLLRAEVASGSERGKQLQAIMQKGELVPLDTVLDMIKDAMI
AKADVSKGYLIDGYPREVKQGEEFEKKIGAPALLLYIDAKGETMVKRLMKRGETSGRADDNEETIKKRLDLYYKATEPVI
AFYEQRGIVRKINSELPVDEVFAIVEKAIDEL

The query sequence (length=192) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ycd:B 193 192 0.9010 0.8964 0.9010 3.70e-125 5x6k:A, 5x6k:B, 5x6l:A, 5x6l:B, 5xru:A, 5xru:B, 5xz2:A, 5xz2:B, 5ycb:A, 5ycb:B, 5ycc:A, 5ycc:B, 5ycd:A, 5ycf:B, 5ycf:A
2 2c95:A 195 191 0.7292 0.7179 0.7330 3.45e-105 3adk:A, 2c95:B, 1z83:A, 1z83:B, 1z83:C
3 2bwj:B 195 191 0.5104 0.5026 0.5131 1.93e-70
4 1uky:A 196 183 0.3854 0.3776 0.4044 1.03e-49 1ukz:A
5 1qf9:A 194 183 0.4010 0.3969 0.4208 1.87e-44 1uke:A, 2ukd:A, 3ukd:A, 4ukd:A, 5ukd:A
6 5g3z:A 215 208 0.3906 0.3488 0.3606 1.03e-39 5g40:A, 5g41:A
7 5g3y:A 213 211 0.3802 0.3427 0.3460 1.64e-39
8 1zak:A 220 215 0.4167 0.3636 0.3721 6.03e-39 1zak:B
9 4qbh:A 217 214 0.3802 0.3364 0.3411 1.23e-34 4qbh:B, 4qbi:A, 4qbi:B, 1zin:A, 1zio:A, 1zip:A
10 4qbg:B 217 211 0.3490 0.3088 0.3175 7.55e-34 4typ:B, 4typ:A
11 4typ:C 190 195 0.3490 0.3526 0.3436 9.59e-34 4typ:D
12 3fb4:A 215 205 0.3385 0.3023 0.3171 2.44e-33
13 1s3g:A 217 204 0.3281 0.2903 0.3088 5.45e-33 5x6j:A
14 4mkh:A 218 208 0.3646 0.3211 0.3365 1.08e-32 3dkv:A, 4mkg:A, 4qbf:A, 4tyq:A, 4tyq:B
15 4ike:A 206 205 0.3594 0.3350 0.3366 1.53e-32 4cf7:A, 4cf7:B, 4ike:B, 4jky:A, 4jky:B, 4jl5:A, 4jl5:B, 4jl6:A, 4jl6:B, 4jl8:A, 4jl8:B, 4jla:A, 4jla:B, 4jlb:A, 4jlb:B, 4jld:A, 4jld:B, 4jlo:A, 4jlo:B, 4jlp:A, 4jlp:B, 2rgx:A, 3sr0:A, 3sr0:B
16 4nu0:A 212 210 0.3542 0.3208 0.3238 4.63e-32 4nu0:B, 4w5j:A, 4w5j:B, 4w5j:C, 4w5j:D
17 4mkf:A 217 207 0.3594 0.3180 0.3333 3.98e-31 3dl0:A, 3dl0:B, 2eu8:A, 2eu8:B, 4mkf:B, 2oo7:A, 2oo7:B, 2ori:A, 2ori:B, 2osb:A, 2osb:B, 1p3j:A, 2p3s:A, 2qaj:A, 2qaj:B, 5x6i:A
18 8bqf:D 215 212 0.3698 0.3302 0.3349 7.14e-31 1ake:A, 1ake:B, 1ank:A, 1ank:B, 7apu:A, 7apu:B, 8bqf:A, 8bqf:B, 8bqf:C, 8bqf:E, 8bqf:F, 8crg:AA, 8crg:BA, 1e4v:A, 1e4v:B, 1e4y:A, 1e4y:B, 2eck:A, 2eck:B, 5eje:A, 5eje:B, 6ham:A, 6hap:A, 3hpq:A, 3hpq:B, 3hpr:A, 3hpr:B, 4jzk:A, 4jzk:B, 8q2b:A, 8q2b:B, 8rj4:A, 8rj4:B, 8rj4:C, 8rj4:D, 8rj6:A, 8rj6:B, 8rj9:A, 8rj9:B, 3x2s:A, 3x2s:B, 4x8l:A, 4x8l:B, 4x8o:A, 4x8o:B
19 3be4:A 215 211 0.3542 0.3163 0.3223 3.60e-30
20 1dvr:A 220 207 0.3333 0.2909 0.3092 6.64e-30 1aky:A, 2aky:A, 3aky:A, 1dvr:B
21 4k46:A 214 213 0.3698 0.3318 0.3333 1.44e-29
22 2c9y:A 218 219 0.3438 0.3028 0.3014 5.43e-29
23 3tlx:B 240 209 0.3229 0.2583 0.2967 3.30e-28 3tlx:A
24 2cdn:A 186 184 0.3021 0.3118 0.3152 5.69e-26
25 2bbw:A 220 191 0.3021 0.2636 0.3037 8.12e-22 2bbw:B
26 2ak3:A 226 185 0.2760 0.2345 0.2865 7.47e-21 2ak3:B, 6zjb:A, 6zjb:B, 6zjb:C, 6zjb:D, 6zjb:E, 6zjb:F, 6zjd:A, 6zje:A
27 3l0s:A 223 186 0.2760 0.2377 0.2849 7.73e-18 3l0p:A, 3l0s:C, 2xb4:A
28 3tlx:D 182 175 0.2500 0.2637 0.2743 6.48e-17
29 7sqc:1A 1639 160 0.2188 0.0256 0.2625 2.98e-13
30 7sqc:1C 1700 160 0.2188 0.0247 0.2625 3.05e-13 7sqc:1D
31 7sqc:1B 1660 160 0.2188 0.0253 0.2625 3.13e-13
32 1y63:A 168 135 0.1562 0.1786 0.2222 0.001
33 2ia5:H 301 188 0.2396 0.1528 0.2447 0.004 2ia5:A, 2ia5:B, 2ia5:C, 2ia5:D, 2ia5:E, 2ia5:J, 1ltq:A, 1rc8:A, 1rpz:A, 1rrc:A, 5uj0:A, 5uj0:B
34 7sqc:C2 1498 71 0.1042 0.0134 0.2817 0.037 7sqc:C0, 7sqc:C1, 7sqc:C3
35 3u7e:B 380 66 0.0990 0.0500 0.2879 0.077 3u7f:B, 3u7g:A, 3u7h:B, 3zvl:A, 3zvm:A, 3zvm:B, 3zvn:A
36 7l4a:A 223 33 0.0781 0.0673 0.4545 0.11
37 7apd:C 287 128 0.1615 0.1080 0.2422 0.12 5a9k:A, 5a9k:B, 5a9k:C, 7apd:D, 7apd:E, 7apd:F, 7apd:A, 2gxa:B, 2gxa:C, 2gxa:D, 2gxa:E, 2gxa:F, 2gxa:G, 2gxa:H, 2gxa:I, 2gxa:J, 2gxa:K, 2gxa:L, 2gxa:A, 2v9p:A, 2v9p:B, 2v9p:C, 2v9p:H, 2v9p:I
38 5mfi:B 240 96 0.1250 0.1000 0.2500 0.20 4d49:A, 4d49:B, 4d49:E, 4d49:F, 5mfi:A, 5mfj:A, 5mfj:B, 5mfk:A
39 5mfi:B 240 50 0.0885 0.0708 0.3400 4.4 4d49:A, 4d49:B, 4d49:E, 4d49:F, 5mfi:A, 5mfj:A, 5mfj:B, 5mfk:A
40 6jzy:A 342 91 0.1510 0.0848 0.3187 0.23 6jzu:A, 6jzz:A
41 6i3p:C 630 31 0.0729 0.0222 0.4516 0.30 6i3p:A, 6i3p:B, 6i3p:D, 6qic:A, 6qic:B, 6qic:C, 6qic:D
42 8c6j:V 934 31 0.0677 0.0139 0.4194 0.46 6hys:A, 6hys:B, 6hys:C, 6hys:D, 6hyt:A, 6hyt:B, 6hyt:C, 6hyt:D, 6hyu:A
43 6hyu:C 585 31 0.0677 0.0222 0.4194 0.68
44 3iij:A 175 36 0.0677 0.0743 0.3611 0.78 3iik:A, 3iil:A, 3iim:A, 5jzv:A
45 6rm8:A 655 33 0.0677 0.0198 0.3939 0.93 6fa5:A, 6faa:A, 6fac:A, 6rm9:A, 6rma:A, 6rmb:A, 6rmc:A, 6rmc:B, 6zm2:A
46 1kdo:A 223 68 0.0938 0.0807 0.2647 0.94 2cmk:A, 2feo:A, 1kdo:B, 1kdp:A, 1kdp:B, 1kdr:A, 1kdr:B, 1kdt:A, 1kdt:B
47 8i6r:B 222 77 0.1198 0.1036 0.2987 1.3 8i6r:D, 8i6s:B, 8i6s:D
48 9d8a:A 172 52 0.0833 0.0930 0.3077 1.5
49 6hw2:B 69 72 0.1250 0.3478 0.3333 1.7 8jzw:C, 8jzw:D, 8jzw:A, 8jzw:B, 5t1i:A, 5t1i:B
50 8cnt:A 620 30 0.0625 0.0194 0.4000 2.4
51 3c41:J 242 105 0.1406 0.1116 0.2571 2.9 3c41:K, 3c4j:A, 3c4j:B, 2olj:A, 2olj:B, 2olk:A, 2olk:B, 2olk:C, 2olk:D, 2q0h:A, 2q0h:B
52 8igq:A 227 59 0.0938 0.0793 0.3051 3.5 8idd:B, 8idd:A, 8igq:B, 8jia:A, 8jia:B
53 1ex7:A 186 162 0.2448 0.2527 0.2901 3.6 1gky:A
54 3gp8:A 551 26 0.0469 0.0163 0.3462 4.0 3gpl:A, 3gpl:B
55 3jaj:z 426 41 0.0833 0.0376 0.3902 4.9 6frk:x, 3jan:z, 7obq:x, 6r6g:AB
56 6hyp:A 2272 76 0.1146 0.0097 0.2895 4.9
57 2grj:A 179 38 0.0781 0.0838 0.3947 5.2 2grj:B, 2grj:C, 2grj:D, 2grj:E, 2grj:F, 2grj:G, 2grj:H
58 6epi:F 395 46 0.0729 0.0354 0.3043 5.9 6eph:B, 6eph:D, 6eph:F, 6eph:H, 6epi:B, 6epi:D, 6epi:H
59 3lw7:B 170 137 0.1458 0.1647 0.2044 6.0
60 2uvq:A 211 21 0.0625 0.0569 0.5714 6.1
61 7obr:x 488 41 0.0833 0.0328 0.3902 6.3 2go5:W, 2j37:W, 5l3q:A, 5l3q:C, 1mfq:C, 7nfx:x, 7qwq:x, 1ry1:W, 4ue5:D, 6y2z:A, 6y32:A, 6y32:C, 6y32:E, 6y32:G
62 7ooc:L 118 55 0.0833 0.1356 0.2909 6.6 7p6z:L, 7pah:L, 7pai:L, 7paj:L, 7pak:L, 7pal:L, 7pam:L, 7pan:L, 7pao:L, 7paq:L, 7par:L, 7pas:L, 7ph9:L, 7pha:L, 7phb:L, 7phc:L, 7pi8:L, 7pi9:L, 7pia:L, 7pib:L, 7pic:L, 7pio:L, 7pip:L, 7piq:L, 7pir:L, 7pis:L, 7pit:L
63 4xrp:A 311 136 0.1667 0.1029 0.2353 7.0 4xrp:D, 4xru:A
64 2nty:C 173 40 0.0781 0.0867 0.3750 7.3 3bwd:D, 2nty:D
65 8yo4:A 442 75 0.1094 0.0475 0.2800 8.0 8ylu:A, 8ylu:B, 8yo4:B, 8yo7:A, 8yo7:B, 8yon:A, 8yon:B
66 7b9v:Q 624 32 0.0573 0.0176 0.3438 8.6
67 5gm6:Y 598 32 0.0573 0.0184 0.3438 8.8
68 1lv7:A 251 56 0.0885 0.0677 0.3036 8.8
69 7dcp:x 670 32 0.0573 0.0164 0.3438 9.1 7dco:x, 7dd3:x

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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