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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ADKHEVLLRMRAIELLAYWEGRLVTTRLMNWFGLSRQQASADIKRYNTLYNPDALIHDPSVKGYVPKASFQPVLTTAHIN
EYLNMLSGLVSESHALIAMPEPNLAAVQLPDRSVRPEVIREVLRACRNQSTLKMIYASMQNPQWHERIISPHTLVYTGFR
WHVRAYCHQSKQFKDFLLSRIDRTPVVVAIESVDPAQDQQWHEEIVLTLIPNPKLNSSQQALVEKDFGMPDGRLQIPVKK
ALAHYTLQRYQTAITLAEAEDALKYPLVLQRSDIEKL

The query sequence (length=277) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7t8k:A 286 277 1.0000 0.9685 1.0000 0.0 7t8k:B
2 2wab:A 327 66 0.0758 0.0642 0.3182 0.48 2wao:A
3 7xg9:A 286 39 0.0433 0.0420 0.3077 4.1 7xg9:B, 7xlf:A, 7xlf:B
4 6ywe:8 331 105 0.1119 0.0937 0.2952 4.4 6yws:8, 6ywv:8, 6ywx:8, 6ywy:8
5 1g8s:A 230 41 0.0397 0.0478 0.2683 5.0
6 8atu:A 2837 54 0.0686 0.0067 0.3519 6.6 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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