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BioLiP
>protein
ADKFVVRLPEGMREQIAEVARSHHRSMNSEIIARLEQSLLQEGA

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3qoq:A 50 44 1.0000 0.8800 1.0000 1.23e-26 3qoq:B, 3qoq:C, 3qoq:D
2 1bdt:B 53 41 0.3409 0.2830 0.3659 0.007 1bdt:A, 1bdt:C, 1bdt:D, 1bdv:A, 1bdv:B, 1bdv:C, 1bdv:D, 1par:A, 1par:B, 1par:C, 1par:D
3 1xje:A 627 42 0.2727 0.0191 0.2857 0.45 3o0n:B, 3o0o:A, 3o0o:B, 3o0q:A, 3o0q:B, 1xje:B, 1xjf:A, 1xjf:B, 1xjg:A, 1xjg:B, 1xjj:A, 1xjj:B, 1xjk:A, 1xjk:B, 1xjm:A, 1xjn:A, 1xjn:B, 1xjn:C, 1xjn:D
4 3vyl:A 297 30 0.2500 0.0370 0.3667 0.63 3vyl:B, 3vyl:C, 3vyl:D, 3vyl:E, 3vyl:F, 3vyl:G, 3vyl:H
5 1gkp:A 458 16 0.2045 0.0197 0.5625 0.92 1gkp:B, 1gkp:C, 1gkp:D, 1gkp:E, 1gkp:F, 1gkq:A, 1gkq:B, 1gkq:C, 1gkq:D
6 4pbg:A 468 26 0.2273 0.0214 0.3846 1.7 4pbg:B
7 4c2u:A 658 31 0.2500 0.0167 0.3548 2.0 4c2t:A, 4c2t:B, 4c2t:C, 4c2t:D, 4c2u:D, 4c30:I, 4c30:D
8 1lws:A 427 26 0.2045 0.0211 0.3462 5.2 1ef0:A, 1um2:A, 1um2:B
9 2cf5:A 352 16 0.2500 0.0312 0.6875 5.5 2cf6:A
10 4iqj:A 1164 35 0.2727 0.0103 0.3429 5.8
11 4iqj:D 1185 35 0.2727 0.0101 0.3429 5.8 3e0d:A, 3e0d:B, 2hpi:A, 2hpm:A, 4iqj:B, 4iqj:C
12 7ms8:A 146 21 0.2045 0.0616 0.4286 6.3 7ms1:A, 7ms3:A, 7ms9:A, 7ms9:B, 7ms9:H, 7ms9:I, 7ms9:K
13 2ymz:B 130 11 0.1591 0.0538 0.6364 7.4 2ymz:D
14 3s9f:A 144 22 0.2273 0.0694 0.4545 7.6
15 3vti:C 305 38 0.2727 0.0393 0.3158 8.7 3vti:D
16 1lwt:A 448 25 0.2045 0.0201 0.3600 9.6
17 6nvy:A 191 23 0.2273 0.0524 0.4348 9.6 6nvy:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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