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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADHELFLQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSHRNSRTNIKRKTFKVDDMLSKVEKMKGEHLQLTFTGFFEVL
LVKVCHKKRKDVSCPIRQVLAVSSNEFEPSNSHMVKSYSLLFRVFVAQMTVFDKNRRLQLLDGEYEVAMQEKKRATWEPT
LQFTLKSTAPIAKPLAQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVYHPKGARI
DVSINECYDDIHRQPGFAFSRNGPVKRTPITHILVCRP

The query sequence (length=278) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6nq3:B 291 291 0.9928 0.9485 0.9485 0.0
2 8tb9:D 443 315 0.9317 0.5847 0.8222 3.36e-178 6c23:A, 6c23:Q, 6c24:A, 6c24:Q, 5wai:B, 5wai:F
3 7kso:C 420 304 0.9137 0.6048 0.8355 1.41e-173 6nq3:F
4 5wak:B 196 277 0.6942 0.9847 0.6968 6.16e-124
5 4aq0:A 765 81 0.0719 0.0261 0.2469 0.73 4aq0:B, 2xsg:A, 2xsg:B
6 5hfi:A 202 63 0.0683 0.0941 0.3016 1.3
7 7shg:A 591 135 0.1079 0.0508 0.2222 1.8 7shg:B
8 8z8x:B 710 41 0.0540 0.0211 0.3659 5.5 8z90:B
9 8z9h:B 676 41 0.0540 0.0222 0.3659 6.0 8p0b:B, 8p0g:B, 8p0u:B, 8z85:B, 8z8j:B, 8z8n:B, 8z97:B, 8z9h:I, 8z9r:B, 8z9r:I
10 8z98:B 647 41 0.0540 0.0232 0.3659 6.3 8z9q:B
11 8tnq:C 35 31 0.0432 0.3429 0.3871 7.1 8tnp:C, 8tnr:C
12 1vs1:D 271 30 0.0432 0.0443 0.4000 8.1 1vs1:A, 1vs1:B, 1vs1:C
13 7vw6:A 913 67 0.0683 0.0208 0.2836 9.6 7e5z:A, 8j83:A, 7xqw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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