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BioLiP
>protein
ADHELFLQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSHRNSRTNIKRKTFKVDDMLSKVEKMKG

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5wak:B 196 64 0.9697 0.3265 1.0000 1.29e-41
2 7kso:C 420 66 1.0000 0.1571 1.0000 3.28e-41 6nq3:F
3 6nq3:B 291 65 0.9848 0.2234 1.0000 4.12e-41
4 8tb9:D 443 66 1.0000 0.1490 1.0000 5.19e-41 6c23:A, 6c23:Q, 6c24:A, 6c24:Q, 5wai:B, 5wai:F
5 8z8x:B 710 36 0.2121 0.0197 0.3889 0.23 8z90:B
6 8z9h:B 676 41 0.2273 0.0222 0.3659 0.26 8p0b:B, 8p0g:B, 8p0u:B, 8z85:B, 8z8j:B, 8z8n:B, 8z97:B, 8z9h:I, 8z9r:B, 8z9r:I
7 8z98:B 647 41 0.2273 0.0232 0.3659 0.27 8z9q:B
8 6bu6:A 322 20 0.1515 0.0311 0.5000 4.4 6ac9:A, 6ac9:B, 6ac9:C, 6ac9:D, 6bp0:B, 6bp0:D, 6bru:B, 6bru:D, 6btw:A, 6btw:B, 6btw:D, 6bu6:B, 6bu6:D, 6cfm:A, 6cfm:B, 6cfm:D, 6cmm:B, 6cmm:D, 6cnx:A, 6cnx:B, 6cnx:C, 6cnx:D, 6cqh:A, 6cqh:B, 6cqh:D, 6csw:B, 6csw:D, 6dd4:B, 6dd4:D, 6npn:A, 6npn:B, 6npn:C, 6npn:D, 3op5:A, 3op5:B, 3op5:C, 3op5:D, 5ukf:A, 5ukf:B, 5ukf:C, 5ukf:D, 5uvf:A, 5uvf:B, 5uvf:C, 5uvf:D, 8v42:B, 8v42:D, 6vxu:A, 6vxu:B, 6vxu:C, 6vxu:D, 6vzh:B, 6vzh:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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