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BioLiP
>protein
ADGKAIFQQKGCGSCHQANVDTVGPSLKKIAQAYAGKEDQLIKFLKGEAPAIVDPAKEAIMKPQLTMLKGLSDAELKALA
DFILSHK

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3x15:A 87 87 1.0000 1.0000 1.0000 6.66e-59 3x15:G, 3x15:D, 3x15:J, 2zxy:A
2 5z25:A 96 50 0.5517 0.5000 0.9600 1.07e-29
3 5z25:A 96 32 0.3678 0.3333 1.0000 3.22e-15
4 1cor:A 82 86 0.3218 0.3415 0.3256 1.63e-09 6kq1:A, 6kq1:B
5 1cch:A 82 89 0.3448 0.3659 0.3371 1.10e-08 1fi3:A, 2i8f:A
6 5xec:A 82 87 0.3448 0.3659 0.3448 1.33e-08 5xed:A
7 1a56:A 81 83 0.3563 0.3827 0.3735 1.53e-08 1a8c:A, 4jcg:A, 3zow:A, 3zow:B, 3zow:C, 3zow:D, 3zow:E, 3zow:F, 3zow:G, 3zow:H, 3zow:I, 3zow:J, 3zow:K, 3zow:L, 3zow:M, 3zow:N, 3zow:O, 3zow:P, 3zow:Q, 3zow:R, 3zox:A, 3zox:B, 3zox:C, 3zox:D, 3zoy:A, 3zoy:B, 3zoy:C, 3zoy:D
8 351c:A 82 89 0.3218 0.3415 0.3146 1.10e-07 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
9 5xec:C 80 85 0.3103 0.3375 0.3176 3.25e-06 5xed:C
10 1c53:A 79 87 0.3563 0.3924 0.3563 7.62e-06
11 4xxl:A 92 87 0.3103 0.2935 0.3103 2.31e-05
12 5aur:A 83 86 0.3333 0.3494 0.3372 3.23e-05 2ai5:A, 5aur:C, 5aur:E, 5aur:G, 5aus:A, 5aus:C, 1ayg:A, 3vym:A, 1ynr:A, 1ynr:B, 1ynr:C, 1ynr:D, 4zid:A
13 1dvh:A 79 83 0.3218 0.3544 0.3373 0.001 2dvh:A, 1dwl:B, 1e08:E
14 4xyd:B 145 86 0.2759 0.1655 0.2791 0.004
15 1w2l:A 97 93 0.2989 0.2680 0.2796 0.006
16 2d0s:A 79 31 0.1494 0.1646 0.4194 0.012
17 1fj0:A 114 34 0.1609 0.1228 0.4118 0.024 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
18 1etp:A 190 79 0.2644 0.1211 0.2911 0.071 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
19 3a0b:V 137 96 0.3103 0.1971 0.2812 0.12 3a0b:v, 3a0h:V, 3a0h:v, 2axt:V, 2axt:v, 5b5e:V, 5b5e:v, 5b66:V, 5b66:v, 7cji:V, 7cji:v, 7cjj:V, 7cjj:v, 7cou:V, 7cou:v, 7d1t:V, 7d1t:v, 7d1u:V, 7d1u:v, 6dhe:V, 6dhe:v, 6dhf:V, 6dhf:v, 6dhg:V, 6dhg:v, 6dhh:V, 6dhh:v, 6dho:V, 6dho:v, 6dhp:V, 6dhp:v, 5e79:V, 5e79:v, 5e7c:V, 5e7c:v, 7eda:V, 9evx:V, 9evx:v, 8ez5:V, 8ez5:v, 8f4c:V, 8f4c:v, 8f4d:V, 8f4d:v, 8f4e:V, 8f4e:v, 8f4f:V, 8f4f:v, 8f4g:V, 8f4g:v, 8f4h:V, 8f4h:v, 8f4i:V, 8f4i:v, 8f4j:V, 8f4j:v, 8f4k:V, 8f4k:v, 4fby:V, 4fby:i, 8gn0:V, 8gn0:v, 8gn1:V, 8gn1:v, 8gn2:V, 8gn2:v, 5gth:V, 5gth:v, 5gti:V, 5gti:v, 5h2f:V, 5h2f:v, 4il6:V, 4il6:v, 8ir5:V, 8ir5:v, 8ir6:V, 8ir6:v, 8ir7:V, 8ir7:v, 8ir8:V, 8ir8:v, 8ir9:V, 8ir9:v, 8ira:V, 8ira:v, 8irb:V, 8irb:v, 8irc:V, 8irc:v, 8ird:V, 8ird:v, 8ire:V, 8ire:v, 8irf:V, 8irf:v, 8irg:V, 8irg:v, 8irh:V, 8irh:v, 8iri:V, 8iri:v, 4ixq:V, 4ixq:v, 4ixr:V, 4ixr:v, 1izl:V, 1izl:0, 6jlj:V, 6jlj:v, 6jlk:V, 6jlk:v, 6jll:V, 6jll:v, 6jlm:V, 6jlm:v, 6jln:V, 6jln:v, 6jlo:V, 6jlo:v, 6jlp:V, 6jlp:v, 5kaf:V, 5kaf:v, 5kai:V, 5kai:v, 3kzi:V, 5mx2:V, 5mx2:v, 1mz4:A, 4pbu:V, 4pbu:v, 4pj0:V, 4pj0:v, 7rf1:V, 7rf1:v, 7rf2:V, 7rf2:v, 7rf3:V, 7rf3:v, 7rf4:V, 7rf4:v, 7rf5:V, 7rf5:v, 7rf6:V, 7rf6:v, 7rf7:V, 7rf7:v, 7rf8:V, 7rf8:v, 4rvy:V, 4rvy:v, 1s5l:V, 1s5l:v, 5tis:V, 5tis:v, 4tnh:V, 4tnh:v, 4tni:V, 4tni:v, 4tnj:V, 4tnj:v, 4tnk:V, 4tnk:v, 4ub6:V, 4ub6:v, 4ub8:V, 4ub8:v, 5v2c:V, 5v2c:v, 4v62:AV, 4v62:BV, 4v82:AV, 4v82:BV, 6w1o:V, 6w1o:v, 6w1p:V, 6w1p:v, 6w1q:V, 6w1q:v, 6w1r:V, 6w1r:v, 6w1t:V, 6w1t:v, 6w1u:V, 6w1u:v, 6w1v:V, 6w1v:v, 1w5c:T, 1w5c:V, 5ws5:V, 5ws5:v, 5ws6:V, 5ws6:v, 3wu2:V, 3wu2:v, 7yq2:V, 7yq2:v, 7yq7:V, 7yq7:v, 5zzn:V, 5zzn:v
20 8xr6:V 137 96 0.2989 0.1898 0.2708 0.25 8wb4:V, 8wb4:v, 8xr6:v
21 7w2j:C 418 97 0.3103 0.0646 0.2784 0.35 8jej:C, 8jek:C, 8k6j:C, 8k6k:C, 7w2j:F, 7wsq:C, 7wsq:F, 8xcm:C, 8xcn:C
22 6jlu:V 137 96 0.2644 0.1679 0.2396 0.72 8iwh:V, 8iwh:v, 6j3y:V, 6j3y:v, 6j3z:V, 6j3z:v, 6j40:V, 6j40:v, 8j5k:V, 8j5k:v, 6jlu:v, 7vd5:V, 7vd5:v
23 1qn2:A 99 26 0.1264 0.1111 0.4231 0.76 1qn2:B, 1qn2:C
24 2dge:A 102 88 0.2414 0.2059 0.2386 0.82 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
25 8zc9:B 971 53 0.1839 0.0165 0.3019 0.98 8wyb:A, 8wyb:B, 8wyb:C, 8wyb:D, 8wyc:A, 8wyc:B, 8wyf:A, 8wyf:B, 8zc9:E
26 8zc9:A 1000 53 0.1839 0.0160 0.3019 0.99 8wyc:C, 8wyc:D, 8wyf:C, 8wyf:D, 8ylt:A, 8ylt:B, 8ylt:C, 8ylt:D, 8zc9:D
27 8smr:K 181 76 0.2414 0.1160 0.2763 1.1 6q2u:A, 8smr:N, 8snh:K, 8snh:N
28 1h1o:A 172 53 0.1954 0.0988 0.3208 2.3 1h1o:B
29 1duw:A 289 23 0.1034 0.0311 0.3913 4.3
30 1fcd:C 174 23 0.1034 0.0517 0.3913 4.7 1fcd:D
31 3wdh:A 698 45 0.1494 0.0186 0.2889 4.9 3wdi:A, 3wdj:A
32 5gzl:A 357 35 0.1494 0.0364 0.3714 5.1 5gzi:B, 5gzi:A, 5gzj:A, 5gzj:B, 5gzl:B, 5gzm:A, 5gzm:B, 5yu0:A, 5yu0:B, 5yu0:C, 5yu0:D, 5yu1:A, 5yu1:B, 5yu1:C, 5yu1:D, 5yu3:A, 5yu3:B, 5yu3:C, 5yu3:D, 5yu4:A, 5yu4:B, 5yu4:C, 5yu4:D
33 5zss:A 388 27 0.1264 0.0284 0.4074 5.3
34 19hc:A 292 23 0.1034 0.0308 0.3913 6.4 19hc:B, 1ofw:A, 1ofw:B, 1ofy:A, 1ofy:B
35 5kha:A 526 71 0.2069 0.0342 0.2535 8.1 5kha:B
36 1e8e:A 124 36 0.1379 0.0968 0.3333 8.6 1gu2:A, 1gu2:B, 1oae:A, 1oae:B
37 8d9m:A 258 40 0.1149 0.0388 0.2500 8.8 7lq5:A, 7lq5:B, 7lq5:C
38 8j1j:B 387 20 0.1149 0.0258 0.5000 8.8 8j12:B, 8j3r:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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