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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADGAKIYAQCAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSFAQLKDEEIA
AVLNHIATAWGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAERKKLGLK

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1c52:A 131 130 1.0000 0.9924 1.0000 2.44e-92 1dt1:A, 1foc:A, 1foc:B, 2fwl:A, 1qyz:A, 1r0q:A, 3vnw:A
2 4ax3:D 457 104 0.3154 0.0897 0.3942 6.75e-18 4ax3:A, 4ax3:B, 4ax3:C, 6f1q:A, 6fja:A, 5obo:A, 5ocb:A, 5ocf:A, 8qgf:A, 6qpt:A, 6qpt:B, 6qpt:C, 6qpt:D, 6qpt:E, 6qpt:F, 6qpu:A, 6qpu:B, 6qpu:C, 6qpu:D, 6qpu:E, 6qpu:F, 6qpv:A, 6qpv:I, 6qpx:A, 6qpx:I, 6qpz:A, 6qpz:I, 6qq0:A, 6qq1:A, 6qq2:A, 7qq2:A, 7r2u:A, 2yqb:A, 3zbm:A, 3ziy:A
3 2zoo:A 438 117 0.3538 0.1050 0.3932 2.93e-15
4 8hdd:B 121 112 0.2846 0.3058 0.3304 1.95e-08
5 7w2j:C 418 115 0.2769 0.0861 0.3130 2.91e-06 8jej:C, 8jek:C, 8k6j:C, 8k6k:C, 7w2j:F, 7wsq:C, 7wsq:F, 8xcm:C, 8xcn:C
6 8gy2:B 433 120 0.2615 0.0785 0.2833 3.83e-05
7 1dvh:A 79 40 0.1308 0.2152 0.4250 0.022 2dvh:A, 1dwl:B, 1e08:E
8 8smr:K 181 78 0.1769 0.1271 0.2949 0.43 6q2u:A, 8smr:N, 8snh:K, 8snh:N
9 5n1t:B 75 91 0.1923 0.3333 0.2747 0.52
10 1c53:A 79 19 0.0769 0.1266 0.5263 0.56
11 7vzg:c 145 16 0.0846 0.0759 0.6875 0.59 7vzr:c
12 6jxn:B 212 53 0.1385 0.0849 0.3396 0.82 6jxn:A, 6jxn:C, 6jxn:D, 6jxs:A, 6jxs:B, 6jxs:C, 6jxs:D
13 8uo8:A 574 53 0.1077 0.0244 0.2642 1.1
14 7tlx:1 102 26 0.0769 0.0980 0.3846 1.6
15 8uf3:A 187 101 0.2154 0.1497 0.2772 1.6 8uf3:B
16 1kkm:B 177 23 0.0846 0.0621 0.4783 2.2 1kkl:A, 1kkl:B, 1kkl:C, 1kkm:A, 1kkm:C
17 2xpy:A 628 31 0.0769 0.0159 0.3226 2.4 2xpz:A, 2xq0:A
18 4gfr:A 529 39 0.1231 0.0302 0.4103 2.6 8i5j:A, 8i5j:B, 8i5k:A, 1zu0:A
19 7aih:Aq 258 30 0.1000 0.0504 0.4333 3.1 7ane:Aq
20 3m97:X 118 44 0.1154 0.1271 0.3409 4.5 1c7m:A, 1i6d:A, 1i6e:A, 1ql3:A, 1ql3:B, 1ql3:C, 1ql3:D, 1ql4:A, 1ql4:B, 1ql4:C, 1ql4:D
21 1w2l:A 97 93 0.2154 0.2887 0.3011 5.1
22 8jxu:A 1410 30 0.1000 0.0092 0.4333 5.6 8jxq:A
23 1etp:A 190 31 0.1077 0.0737 0.4516 6.2 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
24 3h70:A 342 49 0.1077 0.0409 0.2857 6.8
25 7mqa:ST 570 28 0.0923 0.0211 0.4286 7.3 7mq8:ST, 7mq9:ST
26 5e9h:A 518 39 0.0846 0.0212 0.2821 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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