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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ADDNKKLFIETYGCQMNVADSEVIASVMQMAGYSVADTLEEADAVFMNTCSIRDNAEQKILNRLEFFHSLKKKKRGLIVG
VLGCMAERVKDDLITNHHVDLVVGPDAYLTLPELIASVEAGEKAMNVELSTTETYRDVIPSRICGNHISGFVSIMRGCNN
FCTYCIVPYTRGRERSRDVESILNEVADLVAKGYKEVTLLGQNVNSYRFEKPDGETITFPMLLRTVAEAAPGVRIRFTTS
HPKDMSDETLQVIADMPNVCKHIHLPVQSGSSRILKLMNRKYDREWYMDRVAAIRRIIPDCGLSTDIFSGFHSETEEDHQ
LSLSLMEECGYDSAFMFKYSERPGTHASKHLPDDVPEEVKIRRLNEIIALQNRLSAEANARCVGKTYEVLVEGVSKRSRD
QLFGRTEQNRVVVFDRGTHRVGDFVMVKVTESSSATLKGEEVAG

The query sequence (length=444) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mjy:A 448 444 1.0000 0.9911 1.0000 0.0 7mjv:A, 7mjw:A, 7mjw:B, 7mjx:B, 7mjx:A, 7mjz:A
2 4jc0:A 424 436 0.3198 0.3349 0.3257 8.70e-57 4jc0:B
3 4zpm:A 317 100 0.0721 0.1009 0.3200 0.042 4zpm:B
4 4zpn:A 320 91 0.0563 0.0781 0.2747 0.72 4zpn:B, 4zpo:A, 4zpp:A, 4zpp:B, 4zpq:A, 4zpq:B, 4zpq:C
5 6wte:A 567 48 0.0360 0.0282 0.3333 1.4 6wte:B
6 6wtf:A 542 48 0.0360 0.0295 0.3333 1.6 6wtf:B
7 4cej:B 1156 78 0.0541 0.0208 0.3077 1.7 4ceh:B, 4cei:B, 3u44:B, 3u4q:B
8 5mp9:M 381 40 0.0428 0.0499 0.4750 1.9 6ef3:M, 5mpa:M, 5mpb:M, 5mpc:M
9 6fvt:M 421 40 0.0428 0.0451 0.4750 2.0 6ef0:M, 6ef1:M, 6ef2:M, 6fvu:M, 6fvv:M, 6fvw:M, 6fvx:M, 6fvy:M, 7qo4:M, 7qo5:M, 7qo6:M
10 7ytf:A 309 64 0.0383 0.0550 0.2656 4.0
11 1llw:A 1475 40 0.0315 0.0095 0.3500 4.2 1llz:A, 1lm1:A
12 1ofd:A 1491 40 0.0315 0.0094 0.3500 4.4 1ofd:B, 1ofe:A, 1ofe:B
13 8pvs:A 731 27 0.0293 0.0178 0.4815 5.9 8pvs:B
14 6los:A 369 28 0.0293 0.0352 0.4643 8.2
15 4efj:B 291 42 0.0315 0.0481 0.3333 8.8 4efj:A, 4z1x:B, 4z1x:A
16 7tuv:A 672 34 0.0338 0.0223 0.4412 9.2
17 7ohx:y 189 34 0.0315 0.0741 0.4118 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218