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BioLiP
>protein
ADDKSGKAPVITVFDHRGCQRGGPDREYKGKKANGPDDEMCVKVQSAKIAVSATTADSVLQQTISTLYRK

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7t8s:D 70 70 1.0000 1.0000 1.0000 1.10e-47 7t8s:H, 7t8s:L, 7t8s:P
2 7tja:G 67 69 0.5857 0.6119 0.5942 4.35e-23 7tja:Q, 7tja:C, 7tja:K, 7tja:O, 7tlf:C, 7tlf:G, 7tlf:K, 7tlf:O
3 1qgw:B 67 69 0.5571 0.5821 0.5652 5.43e-21 1xf6:B, 1xg0:B
4 7t8s:B 78 65 0.5857 0.5256 0.6308 1.22e-20 7t8s:F, 7t8s:J, 7t8s:N
5 7sut:C 63 61 0.4857 0.5397 0.5574 1.71e-16 7sut:G
6 1qgw:A 76 65 0.5143 0.4737 0.5538 3.59e-16 1xf6:A, 1xg0:A
7 7t7u:A 81 64 0.4429 0.3827 0.4844 2.97e-13
8 7tja:I 75 62 0.4429 0.4133 0.5000 5.95e-13 7tja:A, 7tja:R, 7tja:E, 7tja:M, 7tlf:A, 7tlf:E, 7tlf:I, 7tlf:M
9 4lms:C 68 66 0.4286 0.4412 0.4545 1.10e-11
10 7t7u:C 70 64 0.4000 0.4000 0.4375 3.87e-11
11 4lms:A 80 62 0.3714 0.3250 0.4194 3.84e-10
12 7sut:A 78 57 0.3286 0.2949 0.4035 4.65e-09 7sut:E
13 4lmx:E 66 66 0.3714 0.3939 0.3939 1.06e-04 8el3:C, 8el3:I, 8el3:E, 8el3:L, 8el4:C, 8el4:E, 8el5:C, 8el5:I, 8el5:E, 8el5:L, 8el6:C, 8el6:E, 4lmx:A, 4lmx:G, 4lmx:I, 4lmx:K
14 4lmx:C 66 60 0.3571 0.3788 0.4167 1.87e-04 8el3:A, 8el3:J, 8el3:G, 8el3:K, 8el4:A, 8el4:F, 8el5:A, 8el5:J, 8el5:K, 8el5:G, 8el6:A, 8el6:F
15 4lm6:A 62 58 0.3429 0.3871 0.4138 0.001 4lm6:C
16 7s96:A 63 57 0.3000 0.3333 0.3684 0.001 7s96:C, 7s97:C, 7t89:A, 7t89:C
17 7ssf:A 72 57 0.3286 0.3194 0.4035 0.001 7ssf:C, 7ssf:E, 7ssf:G
18 5viy:I 213 23 0.1571 0.0516 0.4783 0.18
19 4fp8:L 213 23 0.1429 0.0469 0.4348 1.8 4fp8:M, 4fp8:N
20 6ous:N 213 23 0.1429 0.0469 0.4348 3.0 6ous:P, 6ous:R, 6ous:T, 6ous:V, 6ous:X
21 7mxd:D 204 29 0.1429 0.0490 0.3448 3.6 8gje:L, 8gje:J, 8gje:K, 7ly9:C, 7ly9:I, 7mxd:U, 7n28:D, 7n28:K, 7n28:U, 7pc2:L, 7pc2:J, 5v8l:L, 5v8l:K, 5v8m:L, 5v8m:T, 5v8m:U
22 7m4v:D 211 37 0.2429 0.0806 0.4595 4.1 7m4w:D, 7m4x:D, 7m4y:D, 7m4z:D, 7ryf:D, 7ryg:D, 7ryh:D, 7uvv:D, 7uvw:D, 7uvx:D, 7uvy:D, 7uvz:D, 7uw1:D, 6v39:D, 6v3a:D, 6v3b:D, 6v3d:D, 6yhs:B, 6ysi:B
23 6iix:A 323 31 0.1714 0.0372 0.3871 4.6 4mfk:A, 4mfl:A, 4mfp:A, 4mfq:A, 4q36:A, 4q38:A
24 1ce1:L 211 23 0.1286 0.0427 0.3913 7.3
25 8der:L 105 31 0.1571 0.1048 0.3548 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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